Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0676 ATGGACAACAGCATGGAGCAAAACAAGCAAAGGCAACCAACAGCAAGGTCGAGTGGTTCTCAGGCACAGCAACATCTCCCAAACCAGAATGAAAGCAACCAGCAACAGATGATACCATCACCCAACCAGCAACAAATAATACCATCACCCACCATCAATGCTCATTCTCATTCAGCCTTTTCAGCTTTCATGAGAGGCCAACAAAACCAATGCATGCCTAAGCCACCACAACCTGATCCCTCCCAAGCACTTCAACAACAACTCCTCAACTTCTGGGCCAAACAGTTTGGGGAAATTGAGGAAAAAACTGATTTCAGTAACCATAGCTTGCCCTTGGCCAGGATCAAGAGGATCATGAAGAAAGATGAGGAGGTGAAAATGATATCTGCTGATGCATGTGTTATTTTTGCCAAGGCATGTGAGATATTCATCAAGGAGCTCACTTTAAGGTCTTGGGTCAATGCTGAGGAGAACAAGAGAAGGACTCTTCAAAGGAATGACATTGCAACTGCAGTTACTAGAAGTGAGGTGTTCGAATTTTTGGCTGAAACTGTCCCTAGAGATGACACAATGGAGCATGATCTGTATGCGGGCATTCAGAGGGGTGGTGGCAGTGCAAGAAACATGGAGCTTGGTCCTAACTATTATCGTATGCCACCACCACCACCACCACCTAGGAATGTTGCGGCTCCTTCGTATGGACTTCCGAGTATGACTATGGGAAGGCGTGTTCCAAATCAAGCTCGTTCGAGGAACCGTATGACCCGTCCTTCGGGAACTCGAGTGTGGCCACATTCACAGCAGCCAAACCGTGCTCCTGATTCGGATGATAATTGA 837 0.4695 MDNSMEQNKQRQPTARSSGSQAQQHLPNQNESNQQQMIPSPNQQQIIPSPTINAHSHSAFSAFMRGQQNQCMPKPPQPDPSQALQQQLLNFWAKQFGEIEEKTDFSNHSLPLARIKRIMKKDEEVKMISADACVIFAKACEIFIKELTLRSWVNAEENKRRTLQRNDIATAVTRSEVFEFLAETVPRDDTMEHDLYAGIQRGGGSARNMELGPNYYRMPPPPPPPRNVAAPSYGLPSMTMGRRVPNQARSRNRMTRPSGTRVWPHSQQPNRAPDSDDN* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0676 278 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 6 272 - -
Apr2g0676 278 MobiDBLite consensus disorder prediction 243 271 - -
Apr2g0676 278 MobiDBLite consensus disorder prediction 219 278 - -
Apr2g0676 278 Pfam Core histone H2A/H2B/H3/H4 101 172 IPR007125 GO:0003677
Apr2g0676 278 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 6 272 - -
Apr2g0676 278 MobiDBLite consensus disorder prediction 1 49 - -
Apr2g0676 278 Gene3D Histone, subunit A 76 187 IPR009072 GO:0046982
Apr2g0676 278 SUPERFAMILY Histone-fold 81 181 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0676 Apr-Chr2 8235455 8236716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0676 90 241 CCAAT-HAP5 Transcription Factor Family AT1G54830 53.947 2.37e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Apr2g0676 CBFD_NFYB_HMF 1.3e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0676 K08066 - aprc:113855583 543.117