LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr2g0655	ATGGAGCAAACACAGCTCTTACAAGACCAAAACTTCCCTCTCTTCAAAACAACTCGCAATAAACCCTCACAAAACCCTTCCCTCGCCGCAACCACAAACCCCAACTCCGAACCACACAAAACAACCACCTCCACCGTCACAGCCGACGCTGCCACCGCCACGTTCGACGATCTCGGCCTCGCCGAATGGGCGGTCAAGACGTGCACGGAGCTCGGCATGCGGAAGCCGCGGCGCGTGCAGTCGCAGTGCATTCCGAGGGTCCTTGATGGCCGCCACGTGCTTGGCATTGACGAGACTGGGAGCGGTAAGACCGCGGCCTTCGCGCTCCCGATCCTCCACCGTCTCGCCGAGCACCCGTTCGGCGTGTTCGCACTCGTCGTGACGCCCACGCGCGAGCTCGCGTTTCAGCTCGCGGAGCAGTTCCGCGCCCTAGGGTCCTCCCTCCACCTCCGCATCGCGGTGGTTGTTGGCGGCATGGACATGCTGAAACAGGCGAAGGAATTGGTGGCGAGGCCACACCTCGTGATTGCCACACCCGGGAGGATCCACCTCTTACTCCGAGATAGTCCTGATATTCCTCCTGTTTTCTCCAGGACCAACTTCCTTGTCTTGGATGAAGCAGATCGAGTCCTGGATGTTGGTTTTCAGGAGGAATTAAAATTTATTTTTCAGTGTTTACCAGAAAATCGTCAAAACCTGTTCTTTTCTGCAACAACTACAAGTAATCTGCAAAAGTTGCGTGAACGTTATCAAGATAAGCTGTATGTCTATGAGGCATATGAAGGATTCAAAACAGTTGAAACACTCGAGCAGCAGGCTATCTTCATCCCTAAAAAGGTGAAGGATGTATATTTGATGCATATTTTGTCTAAAATGGAAGATATGGGCATTCGGTCTGCCATCATATTTATCTCAACTTGCAGAGATTGTCATCGATTAAGTTTAATGCTTGAAGTGCTTGATCAAGAAGCTGCAGCTCTATATTCATTCAAATCACAAGCTCAGAGGCTTGAAGCACTTCATCATTTTAAATCAGGAAAGGTTTCTATACTGCTAGCAACTGATGTTGCGAGCCGTGGATTGGATATTCCTACAGTGGACCTTGTTATCAATTATGATGTCCCAAGGTTTCCACGAGATTATATTCATCGTGTAGGTCGTACAGCAAGAGCAGGTAGAGGGGGGCTGGCTTTAAGCCTTGTTACCCAGAATGATGTTGATCTTATTCGTGAAATAGAAGTTCTTATTGAACAGCAACTTGAAATGGTTGAATACAAAGAAAATGAGGTGCTCTCTCTCATGAAAAAGGTTTTCAGTGCAAAGAATGTGGCAGAAATGAAGATGATAGATGATGGCTTTGAGGAGAAAGCTAAAGAACGGAAAAAACAGAAACTGAAAATGCTAGCAGAGAAGGGATTGTTGAAGAAAAGAAACAAGAAGAGAAAACGAAATAATGAATTTGCAAAAGAAGGAAAAGAACCTAAACAAGAGAAGGTGGAAGTGGAAGCATTGGCAAATATGCAGTCACTAAAGAAGAGTAAGAAGAGAGAATAA	1554	0.4691	MEQTQLLQDQNFPLFKTTRNKPSQNPSLAATTNPNSEPHKTTTSTVTADAATATFDDLGLAEWAVKTCTELGMRKPRRVQSQCIPRVLDGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSSLHLRIAVVVGGMDMLKQAKELVARPHLVIATPGRIHLLLRDSPDIPPVFSRTNFLVLDEADRVLDVGFQEELKFIFQCLPENRQNLFFSATTTSNLQKLRERYQDKLYVYEAYEGFKTVETLEQQAIFIPKKVKDVYLMHILSKMEDMGIRSAIIFISTCRDCHRLSLMLEVLDQEAAALYSFKSQAQRLEALHHFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVDLIREIEVLIEQQLEMVEYKENEVLSLMKKVFSAKNVAEMKMIDDGFEEKAKERKKQKLKMLAEKGLLKKRNKKRKRNNEFAKEGKEPKQEKVEVEALANMQSLKKSKKRE*	518

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr2g0655	517	Pfam	Helicase conserved C-terminal domain	296	392	IPR001650	-
	Apr2g0655	517	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	53	81	IPR014014	GO:0003724
	Apr2g0655	517	MobiDBLite	consensus disorder prediction	1	45	-	-
	Apr2g0655	517	CDD	DEADc_DDX49	55	258	-	-
	Apr2g0655	517	PANTHER	RNA HELICASE	51	483	-	-
	Apr2g0655	517	Gene3D	-	264	516	IPR027417	-
	Apr2g0655	517	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	84	257	IPR014001	-
	Apr2g0655	517	MobiDBLite	consensus disorder prediction	468	501	-	-
	Apr2g0655	517	CDD	SF2_C_DEAD	269	401	-	-
	Apr2g0655	517	Gene3D	-	18	257	IPR027417	-
	Apr2g0655	517	MobiDBLite	consensus disorder prediction	484	500	-	-
	Apr2g0655	517	SMART	helicmild6	311	392	IPR001650	-
	Apr2g0655	517	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	291	431	IPR001650	-
	Apr2g0655	517	SMART	ultradead3	72	272	IPR014001	-
	Apr2g0655	517	Pfam	DEAD/DEAH box helicase	78	246	IPR011545	GO:0003676\|GO:0005524
	Apr2g0655	517	PANTHER	ATP-DEPENDENT RNA HELICASE DDX49-RELATED	51	483	-	-
	Apr2g0655	517	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	121	412	IPR027417	-
	Apr2g0655	517	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	203	211	IPR000629	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr2g0655	Apr-Chr2	7775189	7783763	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr2g0655	47	405	Eukaryotic Initiation Factors Gene Family	AT3G13920	32.222	1.12e-51	179

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr2g0655	K14778		-	gmx:100804060	795.423