Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0653 ATGGATAAATCAGAGCAGAGTCAGCAGCAACAACAACAGCATGTCATGGGAGTGGCACCAGGAGCTAGCCAAATGGCTTATTCTTCTCACTACCAGACTGCTTCGATGATGGCTTCTGGTGCGCCTGCTGTAGCTGTTCCTTCCCCAACACAACCTCCAGCTGCCTTCTCTAGTTCTGCTCACCAACTTGCATACCAGCAAGCGCAGCATTTCCACCATCAGCAGCAGCAACACCAACAACAGCAGCTTCAAGTGTTCTGGTCAAATCAAATGCAAGAAATTGAGCAAACAATAGACTTTAAAAACCATAGTCTTCCACTTGCTCGGATAAAGAAAATAATGAAAGCTGATGAAGATGTCCGGATGATTTCAGCAGAAGCTCCAGTCATATTTGCAAAAGCTTGTGAAATGTTCATATTAGAGTTGACATTGCGATCCTGGATCCACACAGAAGAGAACAAGAGGAGAACACTACAAAAGAATGATATAGCAGCTGCTATTTCAAGAAATGATGTTTTTGATTTCTTGGTTGATATTATTCCAAGAGATGAGTTGAAAGAGGAAGGACTTGGAATAACTAAAGCGACTATTCCAATAGTGGGTTCTCCAGCTGATATGCCATATTATTATGTCCCTCCACAGCATCCTGTTGGACCTCCTGGAATGATCATGGGGAAACCAATTGATCAAGCAGCGCTGTATTCTACACAGCAGCCTCGACCTCCCATGGCTTTCATGCCATGGCCCCCTACCCAACCCCAGCAGGAGCAGCCATCCCAACAACAACAAACAGACTCTTGA 801 0.4482 MDKSEQSQQQQQQHVMGVAPGASQMAYSSHYQTASMMASGAPAVAVPSPTQPPAAFSSSAHQLAYQQAQHFHHQQQQHQQQQLQVFWSNQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGITKATIPIVGSPADMPYYYVPPQHPVGPPGMIMGKPIDQAALYSTQQPRPPMAFMPWPPTQPQQEQPSQQQQTDS* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0653 266 Gene3D Histone, subunit A 65 182 IPR009072 GO:0046982
Apr2g0653 266 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 7 260 - -
Apr2g0653 266 SUPERFAMILY Histone-fold 62 176 IPR009072 GO:0046982
Apr2g0653 266 MobiDBLite consensus disorder prediction 233 266 - -
Apr2g0653 266 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 260 - -
Apr2g0653 266 Pfam Core histone H2A/H2B/H3/H4 67 167 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0653 Apr-Chr2 7754772 7757699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0653 9 211 CCAAT-HAP5 Transcription Factor Family AT1G56170 68.627 5.43e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Apr2g0653 CBFD_NFYB_HMF 2.3e-17 CL0012