Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0645 ATGACACTAAGCACGTGGGACACACTTCAAGTTCCCAATTCAGCACCACCACCAAACCATCATTTTCCTTATTCAGATGAAAGCTTTCACCTTTACGATAACTACTTTCACCCAACCTGTGATTTTTTCCACCCTTCTCATCAACTTTTTCCATGCACTGACCCCTTCATTTCATTCACTCATCACACTTTTCCAACTGAAGATTACCAACTTCTCCCATGCCCAAAACGTCGAAAGTGCTTCTACGAGGAACAAGAACAGCCCTTGCACTTTTCACTAGAAGACTTTGCACCCTCCAATTTCTTAGATCATAATTTGTGTGTTTTGCAAGAAGATCCAGAGCAAGTGCCACCAGAGTCCGTATTCTGCTCCATGGCGACAGAGTTTAAGGTTCCACAGCAATGTACTTTTGAGGATTTTCAGTGTGAGAAGAAAGGTAACGACAGAACTGTCTCTGCACAAAGCATAGCGGCGAGAGAAAGAAGAAGAAAGATCGCTGAGAAAACACATGAACTTGGAAGCTTGATTCCTGATGGACCAAAAATGAACACAGCTGAGATGCTTCATGCAGCTGCTAAGTATGTTAAGTATCTTCAAGCACAAGTTGACATGCTTCAACTCATCAAGACAGTCAATGAAGAAGACGCGGATCCTTCACTTGAAAAGTTACATGCTCTGGTTATTTCTCCCATTGTTCAAGAGAAGTTGTACTCAAAAGAAAGTTGCTTAGTTCCAAAAGAATTTGTCACAACTTTGACAAATTATAACAATGTTCAATGGGGACCTACCATTATTAAAGATCTTAAAGAGTTGATTGGGCCAGACACTGAAAAGAAAGCAGAACAAGAATAA 852 0.4073 MTLSTWDTLQVPNSAPPPNHHFPYSDESFHLYDNYFHPTCDFFHPSHQLFPCTDPFISFTHHTFPTEDYQLLPCPKRRKCFYEEQEQPLHFSLEDFAPSNFLDHNLCVLQEDPEQVPPESVFCSMATEFKVPQQCTFEDFQCEKKGNDRTVSAQSIAARERRRKIAEKTHELGSLIPDGPKMNTAEMLHAAAKYVKYLQAQVDMLQLIKTVNEEDADPSLEKLHALVISPIVQEKLYSKESCLVPKEFVTTLTNYNNVQWGPTIIKDLKELIGPDTEKKAEQE* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0645 283 CDD bHLH_AtbHLH_like 154 206 IPR045239 -
Apr2g0645 283 Pfam Helix-loop-helix DNA-binding domain 154 199 IPR011598 GO:0046983
Apr2g0645 283 SMART finulus 155 204 IPR011598 GO:0046983
Apr2g0645 283 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 19 262 - -
Apr2g0645 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Apr2g0645 283 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 19 262 - -
Apr2g0645 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 209 IPR036638 GO:0046983
Apr2g0645 283 Gene3D - 150 212 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0645 Apr-Chr2 7628331 7629974 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0645 131 273 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G34820 44.872 5.20e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr2g0645 HLH 3.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0645 - - gmx:102667124 272.322