Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0644 ATGCCGCCAAGCACGTGGGACACTCTTCAAATTCCCAACTCAGAAATCAGCACCATCGAAGAAGCACTACCAGAATTAGCAGCGCCAAACCCCCATTTTTCTTATTCAGATGAAAGCTTTTGCCCTTTTGATAACTTGAACCCAACATGTGATTTTTTGTACACTTCTCATCAACCCTTTACATGCATTGATCCTTTCGTTTCACTCGCTCATCCCACTTTCTCAACCGAAGATTACAACATTCTCCCATGCCCAAAACGCCAAAAGTTCTACGAGGAAGAACAACAACCCTTGTTCTCTTCTTTACAAGACTATGCACCATCTAGTTTCTTAGATCATAATTTTTGCTACTTCGATGTAGAGCAAGTGCCACCAGAGATACTATGCTCTATGGAGTTTAAGCTTCCACCGAAGAAAGAGAGCGAGAGAACCATCTCTGCACAAAGCATAGCGGCAAGAGAAAGGAGAAGAAAGATCATTGATAAAACACAAGAGCTTGGAAAGTTAATTCCTGGTGGACCAAAGATGAACACAGCTGAAATGCTTAGTGCAGCTGCTAAGTATGTTAACTACCTTCAGGCCCAAGTTCAGATGCTTCAACTCATCAAGACATTCAGTGAAGATAAAGCAGGTTCTCCAATTGAAAATTTACATGCTCTGGTTGTTTCTCCCTTCGTTCAAGAGAAGTTATACTTAGAACAAAGGTGCTTTGTTCCAAAAGAATTTGTTATAACTTTGACAAATCATAACAATGTTCAATCGAGACCTACTATTGTTAAGGATCTTAAGGAATTGATTGGGGCAGACACTGAAAAGAAAGCATTATAA 828 0.401 MPPSTWDTLQIPNSEISTIEEALPELAAPNPHFSYSDESFCPFDNLNPTCDFLYTSHQPFTCIDPFVSLAHPTFSTEDYNILPCPKRQKFYEEEQQPLFSSLQDYAPSSFLDHNFCYFDVEQVPPEILCSMEFKLPPKKESERTISAQSIAARERRRKIIDKTQELGKLIPGGPKMNTAEMLSAAAKYVNYLQAQVQMLQLIKTFSEDKAGSPIENLHALVVSPFVQEKLYLEQRCFVPKEFVITLTNHNNVQSRPTIVKDLKELIGADTEKKAL* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0644 275 Gene3D - 140 210 IPR036638 GO:0046983
Apr2g0644 275 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 12 260 - -
Apr2g0644 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Apr2g0644 275 CDD bHLH_AtbHLH_like 148 200 IPR045239 -
Apr2g0644 275 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 12 260 - -
Apr2g0644 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 203 IPR036638 GO:0046983
Apr2g0644 275 Pfam Helix-loop-helix DNA-binding domain 149 193 IPR011598 GO:0046983
Apr2g0644 275 SMART finulus 149 198 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0644 Apr-Chr2 7624461 7625657 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0644 142 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 47.727 7.17e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr2g0644 HLH 5.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0644 - - gmx:102665938 272.707