Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0589 ATGAATGATGCATTTCTTCACTTAGAATATATGGTAGGTAAAGGCCACAAGCCTGATGTAACTCAAGCAACTCAGCTTTTGTATGATCTTTGCAAGTCTAATAAAGCTAGAAAAGCTTTTAGGGTAATGGAGATGATGGTAGGTTCAGGTATTATACCTGATGCAGCTTCTTATACATACTTGGTCAATTTTCTGTGTAAGAGAGGCAATGTTGGGTATGCAATTCAGTTGGTTGAAAAGATGGAGGGTCATGGCTTTCCAACTAGTACTGTTACCTATAACACTCTTGTTAAGGGGCTTTGCATGCATGGTAATTTGAACCAAAGCTTGCAGCTTTTGGATAGGTTGACAAAGAAGGGCTTGGTTCCGAATGCATTCACATACACTTTCTTGCTCGAAGCGGCTTATAAGGAAAGGGGAGTGGATGAAGCCATGAAGCTTCTAGATGAGATCATTGCCAAGGGTGGGGAGCCTAATTTGGTTAGTTACAATGTGTTGTTAACTGGATTGTGCAAGGAAGGGAGAACTGAAGAAGCTATTAGGCTTTTTAGGGAATTGCCTGAAAAGGGTTTCAGTCCTAGTGTTGTGAGTTATAACATTTTGTTGAGGAGTTTGTGCTACGAAAGGCGGTGGGAAGAAGCGAATGAGCTTCTGGCAGAGATGGATAAAAAGGACCAGTCTCCCTCGGTGGTTACTTACAACATATTAATTACTTCTCTTTCTCTTCATGGAAGAACAGAACAAGCTTTCAAAGTTTTGGACGAAATGACAAGGAGTGGGTTCAAGGTGAGTGCCACTAGCTATAATCCAATTATTGCTCGCCTCTGCAAGGAAGGGAAGGTGGATCTTGTTATTCAGTGTCTAGATCAAATGATTCATCGACGCTGTAATCCTAATGAAGGAACACACAATGCTGTTGCAATGTTGTGTGAGCAAGGTAAGGTGCTAGAGGCTTTCTTTATAATCCAAAGCTTGTGTAACAAACAGAACTACCCTATGCACGATTTTTACAAAAATGTGATTTCAAGCTTGTGTAGGAAAGGGAACACATATCCAGCCTTTCAGGTGTTATATGAAATGACAAAGTATGGATTTACTCCAGATTCCTATACTTATTCATCTTTGATTAGAGGAATGTGTAGGGAGGGAATGCTAGATGAGGCTCTTGAGATATTCTGGATTTTAGAAGAAAATGACTACCGGCCTGACGTTGATAACTACAATGCACTTATACTTGGATTTTGCAAATCTCAAAGAACAGACTTGTCAATAGAGGTATTTCAGATGATGGTAAACAAAGGATGTATGCCTAATGAGACAACATATACCATTCTCGTTGAGGGACTTGCTTTTGAAGAAGAGACAGATATAGCAGCTGAGCTAATGAGAGAGTTGTATGAGAAAGATGTTCTGAGCCAAAGCACTGTTGAAAGGCTTTCTATTCAATACGACCTCAAGGAATTAACAGCAACAGGGTAG 1479 0.4016 MNDAFLHLEYMVGKGHKPDVTQATQLLYDLCKSNKARKAFRVMEMMVGSGIIPDAASYTYLVNFLCKRGNVGYAIQLVEKMEGHGFPTSTVTYNTLVKGLCMHGNLNQSLQLLDRLTKKGLVPNAFTYTFLLEAAYKERGVDEAMKLLDEIIAKGGEPNLVSYNVLLTGLCKEGRTEEAIRLFRELPEKGFSPSVVSYNILLRSLCYERRWEEANELLAEMDKKDQSPSVVTYNILITSLSLHGRTEQAFKVLDEMTRSGFKVSATSYNPIIARLCKEGKVDLVIQCLDQMIHRRCNPNEGTHNAVAMLCEQGKVLEAFFIIQSLCNKQNYPMHDFYKNVISSLCRKGNTYPAFQVLYEMTKYGFTPDSYTYSSLIRGMCREGMLDEALEIFWILEENDYRPDVDNYNALILGFCKSQRTDLSIEVFQMMVNKGCMPNETTYTILVEGLAFEEETDIAAELMRELYEKDVLSQSTVERLSIQYDLKELTATG* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0589 492 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 489 - -
Apr2g0589 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Apr2g0589 492 Pfam PPR repeat family 337 381 IPR002885 -
Apr2g0589 492 Pfam PPR repeat family 89 134 IPR002885 -
Apr2g0589 492 Pfam PPR repeat family 402 450 IPR002885 -
Apr2g0589 492 Pfam PPR repeat family 228 269 IPR002885 -
Apr2g0589 492 Pfam PPR repeat family 158 206 IPR002885 -
Apr2g0589 492 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 489 - -
Apr2g0589 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Apr2g0589 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 19 53 IPR002885 -
Apr2g0589 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Apr2g0589 492 Gene3D Tetratricopeptide repeat domain 106 206 IPR011990 GO:0005515
Apr2g0589 492 Gene3D Tetratricopeptide repeat domain 1 105 IPR011990 GO:0005515
Apr2g0589 492 Gene3D Tetratricopeptide repeat domain 207 320 IPR011990 GO:0005515
Apr2g0589 492 TIGRFAM PPR: pentatricopeptide repeat domain 407 439 IPR002885 -
Apr2g0589 492 TIGRFAM PPR: pentatricopeptide repeat domain 267 300 IPR002885 -
Apr2g0589 492 TIGRFAM PPR: pentatricopeptide repeat domain 231 264 IPR002885 -
Apr2g0589 492 TIGRFAM PPR: pentatricopeptide repeat domain 161 195 IPR002885 -
Apr2g0589 492 TIGRFAM PPR: pentatricopeptide repeat domain 91 125 IPR002885 -
Apr2g0589 492 TIGRFAM PPR: pentatricopeptide repeat domain 370 403 IPR002885 -
Apr2g0589 492 TIGRFAM PPR: pentatricopeptide repeat domain 196 229 IPR002885 -
Apr2g0589 492 TIGRFAM PPR: pentatricopeptide repeat domain 57 87 IPR002885 -
Apr2g0589 492 TIGRFAM PPR: pentatricopeptide repeat domain 337 369 IPR002885 -
Apr2g0589 492 SUPERFAMILY HCP-like 5 200 - -
Apr2g0589 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Apr2g0589 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Apr2g0589 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 54 88 IPR002885 -
Apr2g0589 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Apr2g0589 492 Pfam PPR repeat 50 82 IPR002885 -
Apr2g0589 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 89 123 IPR002885 -
Apr2g0589 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Apr2g0589 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Apr2g0589 492 Gene3D Tetratricopeptide repeat domain 325 395 IPR011990 GO:0005515
Apr2g0589 492 Gene3D Tetratricopeptide repeat domain 396 470 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0589 37 490 Glycosyltransferase AT1G05670 24.565 3.07e-45 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0589 - - aprc:113854686 990.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0589 2 6921677 6925276 Apr2g0589 2 6921677 6925276 ECH