Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0500 ATGTCTGCCAAATGCACCCTCTCTCTCATTCCTTTCCTATATAAACCCTTCCGTTTCTCTCTTCCTCTTTCACAAACACCAAAACCATTTCTCTCTCTCTCTCCTCATTTTCACTCAAACGAAGAAGAAGCAATTGCAATTCCTACGACTTCGCGTGGTTCAGGTCCGCTGATTTCCGAGGCGTCTCCTGAGCTGGCCTTTGAACTCGTTCCTGGGAGAAAGGTTGGCTTCTTACGACATTTATGCTCAACTTCAATGGTTGGATTCCAGAGTGACCGCATGCCTGGGAACATGTATAATGGTAATTCTAATAGTTTTCCGGGACGTGTTGAACGACTTGTGAAAGGACGAGAGCTAAGAAAAAGCAGCAGGGCTTCTCTTTCGAATGAATCTCTTGATAGTAATAACTGTAGTAATGTGGTTGCTGAATATTTTGAGCATGACCTGCGCTTAAGAGAAGATAATAACACCAGTGCTTCCAATGCTGAACGATTCCTGGAAGGGGCGGCGCGGGTTCTTAGTGAGGGATGCGAAAGGGAAGATGGAAAACCTTTCAGACAACGGCTTTTGGTCGTGGCCAACAGGCTACCTGTCTCGGCAATTAGGAAAGGCGAGGATTCGTGGTCTTTGGAAATAAGTGCTGGTGGCTTGGTGAGCGCTCTTTTAGGTGTGAAGGAGTTTGAAGCGAGGTGGATAGGATGGGCTGGTGTCAATGTGCCAGATGAGGTTGGGCAAAAGGCACTTACTAAGGCACTGGCTGAAAAAAGGTGTATCCCAGTATTTCTTGATGAAGAGATTGTTCATCAATATTATAATGGCTACTGCAACAATATTTTGTGGCCCCTTTTTCATTACCTTGGACTTCCCCAAGAAGATCGCCTTGCTACCACACGTAGTTTCCAGTCTCAGTTTGAAGCATATCAGAAAGCAAATCAAATGTTTGCTGATGTTGTAAACAAGCACTACGAAGAGGGTGATGTTGTTTGGTGTCATGATTACCATCTTATGTTTCTACCACAATGCTTAAAGAATTACAACAGGAAAATGAAGGTTGGCTGGTTTCTGCATACCCCATTTCCATCTTCTGAAATTCACAGGACACTGCCATCTCGTTCAGAGCTCCTGCATGCTGTTCTTGCAGCTGATTTGGTTGGCTTTCACACCTACGATTATGCACGACATTTTGTTAGTGCATGTACTCGCATTCTTGGACTTGAGGGCACACCTGAAGGGGTTGAGAATCAAGGGAAGCTGACCCGAGTTGCTGCATTTCCAATTGGTATAGACTCAGAACGATTCATACGGGCACTTGACCTTCCTGAAGTCAAGGATCACATAACAGAATTAAAAGAGAGATTTAAAGGAAGAAAGGTAATGTTAGGTGTTGATCGACTTGATATGATTAAAGGAATCCCTCAAAAAATTTTAGCATTTGAAAAATTTTTGGAAGAGAATCGTGATTGGCGTGATAAAGTTGTTCTACTTCAAATTGCTGTGCCAACAAGAACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTCCATGAAATTGTTGGTCGCATCAATGGCAGATTTGGAACACTAACTACTGTTCCTATACATCACCTGGACCGCTCTCTTGATTTTCAAGCACTATGTGCTTTGTATGCTGTTACGGATGTAGCACTTGTCACGTCTTTGAGGGATGGAATGAATCTTGTAAGTTACGAATTTGTGGCCTGCCAAGATAAAAAGAAAGGGGTTCTCATACTTAGTGAATTTGCTGGTGCTGCACAGTCACTTGGTGCTGGGGCAATTCTGGTCAACCCTTGGAACATCACAGAAGTTGCTGCTGCAATTGCCAAAGCTCTGAATATGCAATCATCAGAAAGAGAGAAGAGACATAGACATAATTTTCATCATGTAAAAACCCACACTGCACAGGAATGGGCAGAAACTTTTGTAAGTGAACTAAATGATACTGTTGTTGAGGCACAGCTAAGAACAAAACAAGTTCCCCCACGGCTACCAACCAAGATTGCAATTGAACGCTATCTGCATGCAAAGAACCGATTACTTATTTTGGGTTTCAATGGAACACTAACCGAACCAGTTGAGAGAAAGGGTGATCAGTATAAAGAAATGGAACTCACAGTGCATCCAGAACTGAAACAACCCTTGACAGAACTTTGCAGTGACCCAAACACCACAGTTGTTGTGCTTAGTGGAAGTTGTAGAACAGTTCTAGATGAAAACTTTAAAGAATATGACATCTGGCTGGCAGCAGAGAATGGGATGTTTTTAAATCCTTCAAAGGGAGAATGGATGACCACAATGCCTGAGCAACTGAATATGGAATGGGTTGACAGTGTGAAGCATGTTTTTGAGTACTTCACAGAGAGGACTCCTCGTTCACATTTTGAAGAAAGAGAAGCTTCACTTGTGTGGAATTACAGACATGCAGATGTTGAGTTTGGAAGACTCCAAGCACGGGACATGCTGCAGCATCTCTGGACAGGTCCAATTTCTAATGCATCAGTTGAAGTTGTTCAGGGGAGCCGATCTGTTGAGGTGCGAGCTGCTAATGTTACCAAGGGTGCAGCTATTGATCGCATTCTGGGGGAGATAGTCCACAGTAAATCCATGACAACACCAATTGATTACGTTCTGTGTATAGGACATTTTCTGGCAAAGGATGAAGATATATATGCGTTTTTTGAGCCAGAGCTTCCTTCTGTTGGTATGGGTCTTCCACGAAGTAAGGGAACAGATGGAGTGAAGTTTCCCGTGGAGAGGATATCATCTTTGAAGATTCCAGCTAGTACGAATGGAGCAAAGTCATCTCAAAATAAAGGACAAAGGTCTGTGTCAAATTCTGAGAAGAAAGCAACTAATCATATCTGCCGGGCACAACGTCGGCCAGCTCCTGAAAAGATATCTTGGAATGTCCTTGACCTCAAGAAGGAGAATTACTTTTCATGTGCCGTTGGACGAACACAAACTAATGCTCGTTATACGCTTGGATCATCAGACGACGTTGTTGCATTTCTGAAGGAAATGGCAGATGCATCTCAATCCTCTTTTCTCTGA 3072 0.432 MSAKCTLSLIPFLYKPFRFSLPLSQTPKPFLSLSPHFHSNEEEAIAIPTTSRGSGPLISEASPELAFELVPGRKVGFLRHLCSTSMVGFQSDRMPGNMYNGNSNSFPGRVERLVKGRELRKSSRASLSNESLDSNNCSNVVAEYFEHDLRLREDNNTSASNAERFLEGAARVLSEGCEREDGKPFRQRLLVVANRLPVSAIRKGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEVGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYQKANQMFADVVNKHYEEGDVVWCHDYHLMFLPQCLKNYNRKMKVGWFLHTPFPSSEIHRTLPSRSELLHAVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVENQGKLTRVAAFPIGIDSERFIRALDLPEVKDHITELKERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENRDWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFQALCALYAVTDVALVTSLRDGMNLVSYEFVACQDKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAAIAKALNMQSSEREKRHRHNFHHVKTHTAQEWAETFVSELNDTVVEAQLRTKQVPPRLPTKIAIERYLHAKNRLLILGFNGTLTEPVERKGDQYKEMELTVHPELKQPLTELCSDPNTTVVVLSGSCRTVLDENFKEYDIWLAAENGMFLNPSKGEWMTTMPEQLNMEWVDSVKHVFEYFTERTPRSHFEEREASLVWNYRHADVEFGRLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAANVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLAKDEDIYAFFEPELPSVGMGLPRSKGTDGVKFPVERISSLKIPASTNGAKSSQNKGQRSVSNSEKKATNHICRAQRRPAPEKISWNVLDLKKENYFSCAVGRTQTNARYTLGSSDDVVAFLKEMADASQSSFL* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0500 1023 Pfam Glycosyltransferase family 20 188 653 IPR001830 GO:0003824|GO:0005992
Apr2g0500 1023 Gene3D Glycogen Phosphorylase B; 435 638 - -
Apr2g0500 1023 MobiDBLite consensus disorder prediction 933 959 - -
Apr2g0500 1023 CDD GT20_TPS 188 653 IPR001830 GO:0003824|GO:0005992
Apr2g0500 1023 Gene3D - 688 869 IPR023214 -
Apr2g0500 1023 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 118 1015 - -
Apr2g0500 1023 Pfam Trehalose-phosphatase 691 906 IPR003337 GO:0003824|GO:0005992
Apr2g0500 1023 SUPERFAMILY HAD-like 685 1015 IPR036412 -
Apr2g0500 1023 Gene3D - 775 855 - -
Apr2g0500 1023 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 118 1015 IPR001830 GO:0003824|GO:0005992
Apr2g0500 1023 MobiDBLite consensus disorder prediction 933 958 - -
Apr2g0500 1023 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 187 656 - -
Apr2g0500 1023 Gene3D Glycogen Phosphorylase B; 180 434 - -
Apr2g0500 1023 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 188 653 IPR012766 GO:0003825|GO:0005992
Apr2g0500 1023 CDD HAD_TPP 686 903 - -
Apr2g0500 1023 TIGRFAM T6PP: trehalose-phosphatase 682 900 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0500 Apr-Chr2 5793141 5812789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0500 94 1020 Trehalose Biosynthesis Gene Families AT1G78580 77.086 0.0 1482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0500 K16055 - gmx:100789554 1672.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0500 2 5793141 5812789 Apr5g0748 5 10399021 10420319 ECH
Apr2g0500 2 5793141 5812789 Apr2g0500 2 5793141 5812789 ECH