Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0497 ATGAAGATTCAGTGCAACGTATGTGAAGCTTCGGAGGCTAAGGTTCTGTGCTGTGCTGATGAGGCAGCTTTGTGTTGGGAATGTGATGAGAAGGTTCATGCTGCTAACAAGCTTGCTAGCAAGCACCAGAGAGTTCCTCTTTCTACCTCTTCCTCTCATATGCCCAAATGTGACATTTGTCAGGAGGCACTTGGCTATTTCTTCTGTCTAGAGGATCGGGCTTTACTCTGCAGAAAATGTGATTTGGCAATACACACTGCAAATACTTATGTCTCAGGTCATCAGAGGTTTCTTCTCACTGGTGTAAGAGTAGGCCTTGAAGCTACAGAGCCTGGTGCTTCCTCAACTTCTTTGAAGTCAGATTCTGGGGAGAAAATTTCTGATACCAAGTCGTCATCTGTCTCGAGAAAGGTTTCCACAATGCCCCAGCCATCAGATTACAATGAAGTATTACCCTTTGATGCTGGACTAGTTGGGGAGTTTCCACCAGCTAAGGTGTCTTATGGCGGTGGTTCTACAGCTGGAAACATCTCACAGTGGACGATTGATGAATTTATTGGCCTCAATGAGTTCAGTCAGAATTATAATTACATGGGAGGATCATCAAGGGCTGACAGTGGTAAACTTGGGGATTCTGATTCTCCTGTTTTAAGATCAAGCGAAGAGGAAATGGAGGAGGATGATGACCACTTGGATTGCGTTCCGGATTCGTCATGGACAGTTCCTCAGATGATCCCTTCTCCACCTACAGCCTCTGGATTATACTGGCCAAAAGACCCTCAACGTTTATCTGATAGTGTTCTGTTTGTTCCTGACATATGCTTTTCTCAAATGCAACAACCTCAGAATAGTAGCAATTTTTTAAGACGCCGGAGGCATCTTTAA 885 0.4452 MKIQCNVCEASEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSTSSSHMPKCDICQEALGYFFCLEDRALLCRKCDLAIHTANTYVSGHQRFLLTGVRVGLEATEPGASSTSLKSDSGEKISDTKSSSVSRKVSTMPQPSDYNEVLPFDAGLVGEFPPAKVSYGGGSTAGNISQWTIDEFIGLNEFSQNYNYMGGSSRADSGKLGDSDSPVLRSSEEEMEEDDDHLDCVPDSSWTVPQMIPSPPTASGLYWPKDPQRLSDSVLFVPDICFSQMQQPQNSSNFLRRRRHL* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0497 294 Gene3D Classic Zinc Finger 1 92 - -
Apr2g0497 294 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Apr2g0497 294 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 293 - -
Apr2g0497 294 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Apr2g0497 294 MobiDBLite consensus disorder prediction 110 145 - -
Apr2g0497 294 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Apr2g0497 294 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 293 - -
Apr2g0497 294 SMART bboxneu5 4 47 IPR000315 GO:0008270
Apr2g0497 294 SMART bboxneu5 52 99 IPR000315 GO:0008270
Apr2g0497 294 MobiDBLite consensus disorder prediction 201 230 - -
Apr2g0497 294 CDD Bbox1_BBX-like 5 47 - -
Apr2g0497 294 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0497 Apr-Chr2 5753710 5758423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0497 1 292 C2C2-CO-like Transcription Factor Family AT1G78600 47.546 1.74e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Apr2g0497 zf-B_box 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0497 - - gmx:100790959 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0497 2 5753710 5758423 Apr2g0497 2 5753710 5758423 ECH