Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0489 ATGAGTTTCCCTTCACTTGTTCATCTTTGGTTTCTTGCCTTTGGTTTGATCCCTTTTCTTGCTAGTGGAGCTACTCTGTTAGAAGAGGAAGTGCAAGTTATGAAAAGGATAGCTAAGACAATTGGGAAGGATTGGGACTTCAGTGTAGATCCATGCAGTGGACAAAGTAATTGGAAATCATCTGTTCAAGTGAAGGGGTTTGAAAATTCTGTCAGCTGCAATTGCTCTTTTGCTAATGCCACTTTTTGCCATGTTGTTAGCATTGTTCTCAAGTCACAAAATCTTTCGGGCACACTCCCAAGTGAGCTAGTGATGTTGCCTTACCTCCAAGAAATTGACTTCACCCGCAACTATCTTAATGGTACAATCCCTCCACAATGGAGCTCCATGAAACTTGTCAACATTTCCCTTCTTGGAAACCGAATAACAGGTCCAATCCCAAAAGAATGGGGAAACATCACCACCCTGAAAAGCTTGGTCCTGGAGTTCAATCAATTATCTGGAGAGCTTCCTCCAGAGCTTGGAAATCTCCCCCAGCTTGAAATATTGCTTCTCACCTCCAACTATTTTACTGGAAATTTACCAGCATCATTTGCTAGGCTCACTACATTGAAGCACCTTCGACTTGGCGACAATCAATTCTCTGGAACAATACCCAATTTAATTCAGAGCTGGACAAGTCTTGAGAGACTGGTGATGCAAGGAAGTGGTTTTAGTGGGCCAATTCCTTCCGGAATTTCATTTCTGAAAAACCTCACTGACTTGAGGATCAGTGACTTGAAAGGACCAGATTCTCAATTTCCACAGCTTAAAAACTTGACAAACTTGGAAACACTAGTATTGAGGAGTTGCAATCTTATAGGGACAGTTCCTGAATATCTTGGAAATGTGACTACTTTAAGATCATTAGACCTCAGTTTTAACAAATTAACTGGACCGATTCCAAGAACGATCGGTAACCTAGAGAACATTAATATACTATATTTAACCGGAAACAATTTTAGTGGACCACTGCCGAATTGGATAGATAAACCAGACTACACAGATCTCTCATATAACAATCTGAGTATCGAAAATCCAGAGCAATTGACATGTCAACAGGGAAGCGTGAACTTGTTTGCATCATCTTTGAAGGGAAATAACATGGGAATGGTTCCATGTTTGGGGAACATTAACTGTCCTAAAACTCGGTACTCTCTCCATATAAATTGTGGTGGGAAGCTTATTTCTAATGAAAGCGTTACATATGATGATGATTCACAAGAAGCTGGACAAGCAAGATTTCGCCGGACAGGATCAAACTGGGTATTTAGCAACACTGGTCATTTCTTTGATAGCAGCCGCTTAGACTACTATACTTGGTCTAATGCTACTATGCTTGCTATGGACAATAGTGAATTGTATATGGATGCACGTGTTTCTCCCCTCTCTCTCACATATTATGGATTTTGCATGGAAAATGGAAACTACACTGTAAATCTGCATTTTGCTGAGATAATGTTCACGGATGATCACACATATAGCAGCCTTGGAAGACGTCTATTTGACATCTATATTCAGAGAAACTTGGTGCTAAAGGATTTCAACATTGTAAAAGAAGCAGGAGGTGTTGGTAAGGCAGTCATAAAAAAGTTCACTGCTATTGTGAATAGCAATACCTTGGAGATCCGCTTGCATTGGGCTGGAAAAGGGACAACTGCTATTCCTTTTGGATCAGTTTATGGTCCTCTCATATCAGCTATATCTGTTGATCCTGATTTTACACCCCCAGTGAAAAATAGAAGTGGCATACCTGTGTGGTCCATAGTTGCTGTTATAATTGCTGGAGCATTTGTTATCATCATGGTTTTTGGTATAGCTTGGTGGAGAGGATGTCTAGGAAGGAAAGGTACACTAGAAAAAGAGCTAAGGGGTGTAGATCTGCAAACTGGCTTATTTAGCTTACGGCAAATTAGAGCAGCAACTAACAACTTTGATATTGCATTTAAGATTGGAGAAGGCGGGTTTGGTCCTGTTTACAAGGGTGTTCTTTCAGATGGCACAGTGATAGCAGTTAAACAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTTATTAATGAGGTTGGCATGATTTCTGCTTTGCAACATCCTTGTCTAGTTAAACTCTATGGTTGTTGTATGGAAGGAGATCAGTTGTTGCTAATATATGAATACATGGAAAACAACAGTCTTGCCCGTGCTTTGTTTGCGCAAGAAAAATATCAATTGAAGTTGGATTGGTCAACAAGGCAGAGGATTTGTGTTGGTATTGCTAGAGGTTTGGCTTATCTCCATGGAGAATCAAGGCTAAAGATAGTTCACAGGGACATCAAGGCCACTAATGTACTATTGGATAAAGATCTCAATCCAAAGATATCTGATTTTGGATTGGCCAAGCTTGATGAAGAGGGCTACACCCACATAACTACTAGAGTAGCTGGCACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACTGATAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATTGTCAGTGGAAAGAGCAATTCCATGAACTGGCCAAAGGAAGATTGCTTCTGTCTTGTTGATTGGACAAATGACTTGAAAGGAAAAGGCAATGTAATGGACCTAGTGGATGAGAAGTTAGGCGAAGACTTCAACAAAGAGGAAGTAATGGTCATGATCAATGTGGCTCTTCTATGTACACAAGTTTCTCCGATGAACAGACCCACCATGGCTTCAGTTGTAAGTATGCTTGAAGGCAAAACTATGGTTCAAGACACGGTGTCAAACACAAGCCAGGTATTGGATGGAAAGAAGCTGGAGGTAATCCAACAGTATTACCATCTGAGAGGAAAAAATAAGATCCTTGAGACTCAAGAGGAGAGCATTTCAATTGGTGAAACTTCAGCATTTATGACTGAAACAGATCTATATTCTGTCAACCTGGATTCTTCTTACTGGGAAAAATGTGATTAG 3009 0.4018 MSFPSLVHLWFLAFGLIPFLASGATLLEEEVQVMKRIAKTIGKDWDFSVDPCSGQSNWKSSVQVKGFENSVSCNCSFANATFCHVVSIVLKSQNLSGTLPSELVMLPYLQEIDFTRNYLNGTIPPQWSSMKLVNISLLGNRITGPIPKEWGNITTLKSLVLEFNQLSGELPPELGNLPQLEILLLTSNYFTGNLPASFARLTTLKHLRLGDNQFSGTIPNLIQSWTSLERLVMQGSGFSGPIPSGISFLKNLTDLRISDLKGPDSQFPQLKNLTNLETLVLRSCNLIGTVPEYLGNVTTLRSLDLSFNKLTGPIPRTIGNLENINILYLTGNNFSGPLPNWIDKPDYTDLSYNNLSIENPEQLTCQQGSVNLFASSLKGNNMGMVPCLGNINCPKTRYSLHINCGGKLISNESVTYDDDSQEAGQARFRRTGSNWVFSNTGHFFDSSRLDYYTWSNATMLAMDNSELYMDARVSPLSLTYYGFCMENGNYTVNLHFAEIMFTDDHTYSSLGRRLFDIYIQRNLVLKDFNIVKEAGGVGKAVIKKFTAIVNSNTLEIRLHWAGKGTTAIPFGSVYGPLISAISVDPDFTPPVKNRSGIPVWSIVAVIIAGAFVIIMVFGIAWWRGCLGRKGTLEKELRGVDLQTGLFSLRQIRAATNNFDIAFKIGEGGFGPVYKGVLSDGTVIAVKQLSSKSKQGNREFINEVGMISALQHPCLVKLYGCCMEGDQLLLIYEYMENNSLARALFAQEKYQLKLDWSTRQRICVGIARGLAYLHGESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEGYTHITTRVAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNSMNWPKEDCFCLVDWTNDLKGKGNVMDLVDEKLGEDFNKEEVMVMINVALLCTQVSPMNRPTMASVVSMLEGKTMVQDTVSNTSQVLDGKKLEVIQQYYHLRGKNKILETQEESISIGETSAFMTETDLYSVNLDSSYWEKCD* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0489 1002 Pfam Malectin domain 399 581 IPR021720 -
Apr2g0489 1002 SMART serkin_6 658 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0489 1002 Gene3D Ribonuclease Inhibitor 189 263 IPR032675 -
Apr2g0489 1002 Gene3D Phosphorylase Kinase; domain 1 629 733 - -
Apr2g0489 1002 Gene3D Ribonuclease Inhibitor 264 389 IPR032675 -
Apr2g0489 1002 CDD STKc_IRAK 664 931 - -
Apr2g0489 1002 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 377 980 - -
Apr2g0489 1002 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 286 341 - -
Apr2g0489 1002 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 72 287 - -
Apr2g0489 1002 Pfam Leucine rich repeat 274 334 IPR001611 GO:0005515
Apr2g0489 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 780 792 IPR008271 GO:0004672|GO:0006468
Apr2g0489 1002 Pfam Protein tyrosine and serine/threonine kinase 663 929 IPR001245 GO:0004672|GO:0006468
Apr2g0489 1002 ProSiteProfiles Protein kinase domain profile. 658 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0489 1002 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 286 341 - -
Apr2g0489 1002 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 377 980 - -
Apr2g0489 1002 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 72 287 - -
Apr2g0489 1002 Gene3D Transferase(Phosphotransferase) domain 1 734 946 - -
Apr2g0489 1002 SUPERFAMILY L domain-like 81 355 - -
Apr2g0489 1002 Gene3D - 395 585 - -
Apr2g0489 1002 SUPERFAMILY Protein kinase-like (PK-like) 642 935 IPR011009 -
Apr2g0489 1002 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0489 Apr-Chr2 5683231 5693319 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0489 17 963 Receptor kinase-like Gene Family AT1G53420 54.754 0.0 1019
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr2g0489 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0489 - - gmx:100786496 1690.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0489 2 5683231 5693319 Apr2g0489 2 5683231 5693319 ECH