Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0465 ATGAAGAGGAACAATTTGATGAAAGGTAATTACACTTACACTTCATCTACCAACAAGAGTCCAACAAAGGAGTCGTCCACCTATGTTCTCAACTGCTATAACAAGAACACCATGGCCAAAGAATTCATTTGGGACTGCAACAACTCTCACAGTAATGGTGAATATCATGATCAGGACTACATGAATGGCTTCCCATGGCCACCAAGATCATACACATGTAGCTTCTGTAGAAAGGAGTTCAAGTCTGCTCAGGCACTTGGTGGACACATGAATGTTCATAGGAGGGATAGAGCAAGGTTGAGACAGTCACCTCCAACTGAAGGTGGTCAAAGCCATGTGCTGAACCTTAACCTTGAGCCTAACGCTAACCCTAACAACTCAACCTCATCTTTGTCTTTACCAACATCATCTTCTCCACCTCTTAAGCCTGTCAGTTGCACATTGCCCTTGTTTGTTTCTGCTACTCCTCCTCCATTTTCTCCACCTTCTGCTTCACATTCTTCTGAGTTGAAGAGATGGGTTGTTGTGGATGGTATCCTATTGAACCCTTTGAGCACAAAGAATCCAGAGCCCACAAAGTCAAAGATTGCAGAATCTTTATCAGCTGGGATTGGAGAATATGATCATGCTTTTGGAAGAGAAGATGGGTGTAAAATGTTGAAGAAGGGTGAGATTCTCAGGATGGATTTGGAGATAGGTTTGCCGAAAAGCTATGATTTAGATCTGGAGCTTCGTTTGGGTACTTACTCTTAG 753 0.429 MKRNNLMKGNYTYTSSTNKSPTKESSTYVLNCYNKNTMAKEFIWDCNNSHSNGEYHDQDYMNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSPPTEGGQSHVLNLNLEPNANPNNSTSSLSLPTSSSPPLKPVSCTLPLFVSATPPPFSPPSASHSSELKRWVVVDGILLNPLSTKNPEPTKSKIAESLSAGIGEYDHAFGREDGCKMLKKGEILRMDLEIGLPKSYDLDLELRLGTYS* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0465 250 MobiDBLite consensus disorder prediction 1 24 - -
Apr2g0465 250 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Apr2g0465 250 Pfam C2H2-type zinc finger 71 95 - -
Apr2g0465 250 SMART c2h2final6 71 93 IPR013087 -
Apr2g0465 250 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 10 248 - -
Apr2g0465 250 PANTHER OS07G0101800 PROTEIN 10 248 - -
Apr2g0465 250 MobiDBLite consensus disorder prediction 87 138 - -
Apr2g0465 250 SUPERFAMILY beta-beta-alpha zinc fingers 68 97 IPR036236 -
Apr2g0465 250 Gene3D Classic Zinc Finger 67 114 - -
Apr2g0465 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 98 IPR013087 -
Apr2g0465 250 MobiDBLite consensus disorder prediction 104 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0465 Apr-Chr2 5353996 5354748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0465 51 247 C2H2 Transcription Factor Family AT3G23130 41.872 6.72e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr2g0465 zf-C2H2_6 1.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0465 - - var:108333719 317.775