Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0463 ATGTCGCTGAGGAAGGTCTTTCGCTCTCGCAAATTCTCCAGATCGTTCAAGGAGCCGCCGGTAATTGACGCCGCCGATGACCGCCGTGACGCCGCCGGCGAGGATGCAGCGCAGGGCAACGGGTGGTCGAGCATGTTGCCGGAGATTCTCGGCGAGATCATACGGCGAGTTGACGCCGCCGAGGAGCAGTGGCCGCACCGCCAAAACGTCGTCGCTTGCGCGTGCGTGTGTAAGCGGTGGCGAGAAATGACGCGTGAGATCGTTCGGTCACCTTCCCACAACGGCAAAATCACTTTCCCTTCTTGTCTCAAACAGCCAGGACCACGTGACATTCCCCATCAATGTCTTATAAGGCGGAACAAAAAGACCTCAACTTTTTATCTATATCTTGCCCTTACACCATCTTTTACGGATAAAGGAAAGTTTCTGCTAGCAGCTAGGAGATACAGGTGTGGTACCCACACTGAGTATATAATTTCACTCGATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTCGGAAAGTTAAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCATAGTGGTGCAAAACCATCAAGTGGCCGAGCAAGCCGTCGGTTCGCCAGCAAGCAGATAAGCCCACAAGTTCCTGCAGGTAACTTTGAGGTGGGGCAAGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGGAGGATGGTTTGCTCCCTGAAGTCTCCTGTCTCATCAGCGGGTGAAAGTTCAGACAGCTTGTCTCTTGATAACCATAAGATGCATGGTAAAGAACTCGCTGCATCTGGCTACACAATCTTGAAGAATAAAGCCCCAAGGTGGCATGAGCATTTGCAATGTTGGTGCTTGAACTTCCATGGTCGTGTTACAGTTGCCTCAGTGAAGAACTTTCAGCTAGTTGCAACTGTGGACCAAAGCCAACCAGGAGGAAAAGGAGATGAGGAAACCGTTCTCCTCCAATTTGGTAAAGTAGGGGATGATACTTTTACCATGGATTATAGACAACCCTTATCTGCCTTTCAGGCTTTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTTGCATGTGAGTAA 1116 0.4955 MSLRKVFRSRKFSRSFKEPPVIDAADDRRDAAGEDAAQGNGWSSMLPEILGEIIRRVDAAEEQWPHRQNVVACACVCKRWREMTREIVRSPSHNGKITFPSCLKQPGPRDIPHQCLIRRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKSPVSSAGESSDSLSLDNHKMHGKELAASGYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0463 371 ProSitePatterns Tub family signature 1. 299 312 IPR018066 -
Apr2g0463 371 SUPERFAMILY F-box domain 35 85 IPR036047 GO:0005515
Apr2g0463 371 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 27 371 - -
Apr2g0463 371 PANTHER TUBBY-RELATED 27 371 - -
Apr2g0463 371 ProSitePatterns Tub family signature 2. 356 371 IPR018066 -
Apr2g0463 371 SUPERFAMILY Tubby C-terminal domain-like 91 371 IPR025659 -
Apr2g0463 371 PRINTS Tubby superfamily signature 157 173 IPR000007 -
Apr2g0463 371 PRINTS Tubby superfamily signature 173 197 IPR000007 -
Apr2g0463 371 PRINTS Tubby superfamily signature 222 249 IPR000007 -
Apr2g0463 371 PRINTS Tubby superfamily signature 281 298 IPR000007 -
Apr2g0463 371 PRINTS Tubby superfamily signature 299 315 IPR000007 -
Apr2g0463 371 PRINTS Tubby superfamily signature 328 347 IPR000007 -
Apr2g0463 371 PRINTS Tubby superfamily signature 349 371 IPR000007 -
Apr2g0463 371 Pfam F-box domain 42 89 IPR001810 GO:0005515
Apr2g0463 371 Pfam Tub family 103 366 IPR000007 -
Apr2g0463 371 Gene3D Tubby Protein; Chain A 98 371 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0463 Apr-Chr2 5329968 5334808 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0463 1 371 TUB Transcription Factor Family AT1G53320 73.351 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Apr2g0463 Tub 2.6e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0463 K19600 - gmx:100808096 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0463 2 5329968 5334808 Apr2g0463 2 5329968 5334808 ECH