Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr2g0463 | ATGTCGCTGAGGAAGGTCTTTCGCTCTCGCAAATTCTCCAGATCGTTCAAGGAGCCGCCGGTAATTGACGCCGCCGATGACCGCCGTGACGCCGCCGGCGAGGATGCAGCGCAGGGCAACGGGTGGTCGAGCATGTTGCCGGAGATTCTCGGCGAGATCATACGGCGAGTTGACGCCGCCGAGGAGCAGTGGCCGCACCGCCAAAACGTCGTCGCTTGCGCGTGCGTGTGTAAGCGGTGGCGAGAAATGACGCGTGAGATCGTTCGGTCACCTTCCCACAACGGCAAAATCACTTTCCCTTCTTGTCTCAAACAGCCAGGACCACGTGACATTCCCCATCAATGTCTTATAAGGCGGAACAAAAAGACCTCAACTTTTTATCTATATCTTGCCCTTACACCATCTTTTACGGATAAAGGAAAGTTTCTGCTAGCAGCTAGGAGATACAGGTGTGGTACCCACACTGAGTATATAATTTCACTCGATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTCGGAAAGTTAAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCATAGTGGTGCAAAACCATCAAGTGGCCGAGCAAGCCGTCGGTTCGCCAGCAAGCAGATAAGCCCACAAGTTCCTGCAGGTAACTTTGAGGTGGGGCAAGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGGAGGATGGTTTGCTCCCTGAAGTCTCCTGTCTCATCAGCGGGTGAAAGTTCAGACAGCTTGTCTCTTGATAACCATAAGATGCATGGTAAAGAACTCGCTGCATCTGGCTACACAATCTTGAAGAATAAAGCCCCAAGGTGGCATGAGCATTTGCAATGTTGGTGCTTGAACTTCCATGGTCGTGTTACAGTTGCCTCAGTGAAGAACTTTCAGCTAGTTGCAACTGTGGACCAAAGCCAACCAGGAGGAAAAGGAGATGAGGAAACCGTTCTCCTCCAATTTGGTAAAGTAGGGGATGATACTTTTACCATGGATTATAGACAACCCTTATCTGCCTTTCAGGCTTTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTTGCATGTGAGTAA | 1116 | 0.4955 | MSLRKVFRSRKFSRSFKEPPVIDAADDRRDAAGEDAAQGNGWSSMLPEILGEIIRRVDAAEEQWPHRQNVVACACVCKRWREMTREIVRSPSHNGKITFPSCLKQPGPRDIPHQCLIRRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKSPVSSAGESSDSLSLDNHKMHGKELAASGYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE* | 372 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr2g0463 | 371 | ProSitePatterns | Tub family signature 1. | 299 | 312 | IPR018066 | - | |
Apr2g0463 | 371 | SUPERFAMILY | F-box domain | 35 | 85 | IPR036047 | GO:0005515 | |
Apr2g0463 | 371 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 7 | 27 | 371 | - | - | |
Apr2g0463 | 371 | PANTHER | TUBBY-RELATED | 27 | 371 | - | - | |
Apr2g0463 | 371 | ProSitePatterns | Tub family signature 2. | 356 | 371 | IPR018066 | - | |
Apr2g0463 | 371 | SUPERFAMILY | Tubby C-terminal domain-like | 91 | 371 | IPR025659 | - | |
Apr2g0463 | 371 | PRINTS | Tubby superfamily signature | 157 | 173 | IPR000007 | - | |
Apr2g0463 | 371 | PRINTS | Tubby superfamily signature | 173 | 197 | IPR000007 | - | |
Apr2g0463 | 371 | PRINTS | Tubby superfamily signature | 222 | 249 | IPR000007 | - | |
Apr2g0463 | 371 | PRINTS | Tubby superfamily signature | 281 | 298 | IPR000007 | - | |
Apr2g0463 | 371 | PRINTS | Tubby superfamily signature | 299 | 315 | IPR000007 | - | |
Apr2g0463 | 371 | PRINTS | Tubby superfamily signature | 328 | 347 | IPR000007 | - | |
Apr2g0463 | 371 | PRINTS | Tubby superfamily signature | 349 | 371 | IPR000007 | - | |
Apr2g0463 | 371 | Pfam | F-box domain | 42 | 89 | IPR001810 | GO:0005515 | |
Apr2g0463 | 371 | Pfam | Tub family | 103 | 366 | IPR000007 | - | |
Apr2g0463 | 371 | Gene3D | Tubby Protein; Chain A | 98 | 371 | IPR025659 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr2g0463 | Apr-Chr2 | 5329968 | 5334808 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr2g0463 | 1 | 371 | TUB Transcription Factor Family | AT1G53320 | 73.351 | 0.0 | 558 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Apr2g0463 | Tub | 2.6e-102 | CL0395 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr2g0463 | K19600 | - | gmx:100808096 | 658.292 |