Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0447 ATGGCCTCGTCTTACCGTGACCGCACGTCGGAGTTCCGGTCACTGTCGGAGACTCTGAAGAAGACTGGGGGAGCCACGTTGCCCCTGGGTCAACCCGAGAATGCTCCGTCTACGTCTCACGGATCCTATTCGAGATCCGAATTCAACCGCAAAGCCTCCCGAATCGGATTGGGGATCCACGAAACCTCGCAGAAGATCGCGAGGCTAGCTCAGTTGGCGAAGAAATCGTCCATGTTCAACGATCCGATTGTGGAAATCCAAGAACTCACCGTTTTGATTAAAAACGAGATCACAGCGTTGAACTCTGCTCTCTCCGATTTGCAAACAATTCAGAACATGGATATAGCCGATGGCAATTACTCGGAGGATAGGATTGTGCATTCAACTGCTGTATGTGATGACTTGAAGAGCAAACTCATGGGAGCCACGAAGCACCTTCAAGATGTTTTAACTACTCGGACAGAGAATATTAAGGCTCATGAGAATAGGAAGCAGATATTTTCCAAGAATGTGTCAAGAGAGAACCCTTTCCAGAATCAGCCAAAGCCAGCCACCGAGCCACCACCTTGGTCAAATTCGCTGAATACATCTGAGAGTTTGCAAAAAGCACCAGGATTACCATCAAATGGAGTTCCTGTTGGCAATCAACTAAGACGAAGGTTGGCTGTGGACAACGCTCCATCTCAGCAAATGGAAATGTCTATGGTACAGCAGGTTGTTCCTCGACAAGATAATTATGCTCAAAGTCGAGCAACTGCTCTGCACAATGTGGAATCTACTATCACTGAACTTAGTGGGATCTTCTCACATTTGGCTACAATGGTTGCCCATCAAGGGGAGCTTGCTATCAGGATTGATGACAATATGGATGAGTCATTGGCAAATGTTGAAGGAGCCCACAGTTCTTTATTAAGGCATCTCAACCAAATATCTTCAAATAGGTGGCTTCTAATCAAGATATTTGCCATTCTAATACTTTTCCTCATGATCTTCATATTCTTTGTGGCCTAA 1011 0.458 MASSYRDRTSEFRSLSETLKKTGGATLPLGQPENAPSTSHGSYSRSEFNRKASRIGLGIHETSQKIARLAQLAKKSSMFNDPIVEIQELTVLIKNEITALNSALSDLQTIQNMDIADGNYSEDRIVHSTAVCDDLKSKLMGATKHLQDVLTTRTENIKAHENRKQIFSKNVSRENPFQNQPKPATEPPPWSNSLNTSESLQKAPGLPSNGVPVGNQLRRRLAVDNAPSQQMEMSMVQQVVPRQDNYAQSRATALHNVESTITELSGIFSHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLRHLNQISSNRWLLIKIFAILILFLMIFIFFVA* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0447 336 PANTHER SYNTAXIN 4 335 IPR045242 -
Apr2g0447 336 MobiDBLite consensus disorder prediction 1 47 - -
Apr2g0447 336 MobiDBLite consensus disorder prediction 160 213 - -
Apr2g0447 336 Pfam SNARE domain 281 332 IPR000727 -
Apr2g0447 336 CDD SNARE_syntaxin5 247 332 - -
Apr2g0447 336 MobiDBLite consensus disorder prediction 31 47 - -
Apr2g0447 336 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 4 21 IPR021538 -
Apr2g0447 336 SUPERFAMILY t-snare proteins 44 299 IPR010989 GO:0016020|GO:0016192
Apr2g0447 336 MobiDBLite consensus disorder prediction 189 204 - -
Apr2g0447 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 244 306 IPR000727 -
Apr2g0447 336 PANTHER SYNTAXIN-31 4 335 - -
Apr2g0447 336 Gene3D - 43 299 - -
Apr2g0447 336 ProSitePatterns Syntaxin / epimorphin family signature. 250 289 IPR006012 GO:0005484|GO:0006886|GO:0016020
Apr2g0447 336 SMART tSNARE_6 239 306 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0447 Apr-Chr2 5183136 5187456 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0447 1 336 SNARE and Associated Proteins AT5G05760 67.751 4.50e-156 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0447 K08490 - gmx:100777383 537.724