Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0446 ATGGAGAATTTATGTGATGATAACTTTGAAGGATCTATTGAAGAAAGACAGATTTTTACTGAGGTCTTTTCTGCTAATGACATTTTTCAGTCTAGTCAGAAGTCTCTTGTTTCTGGAGTCATCAACTTTGATCATGAATCCACTAAAAGTAAAAACACATTTAAATCATTCTGCTCTAGTAATGAAAATTCAGTTGTATTGCATCCCTCATCATCTAGGCTTACACACCCTGAGGAGGACTTTAATGTAATTCAGCAATCCAAAGAGACTGCTCTGGGGTGTATGCCAGAGAGTTTCGTTTGTGAAGACCAGAATGACGAGGATGTGAATGTCAAACGTATGAAATTTTCTCTCCACGAACTTGCTTGTAGTAGATCTGATTCAGAAAATATTTTGAGTTCATCAAGACTTTCAAAAGTAGTAGTTACTAACCTGTCACATGCTGCTTCAGACTGTGATAGTGAATCAGTTCCATTTTGTTTAGTTGAATCATCAAAACATGGTGTGATATCTAGTTGCTATCTATTGAAGAATAACATTTTAAATAAACAAGTTGCTAAGGATGATGATGCTACAAATTGTAAATCAATATCAGCAGATGGGAATGTTGCAAAAGAGGTGTCTGTAAGTAAAGCAGTTGCTTCTCCTGTTTCGCAGGAAAGCTTTGCAAACAGGCTTGTAGTTACCAGTCCATCAATTACTGTTGTGAAAAAGTCAGGGTCTCCCTTAAATCCTGAAGAAATGCCAGAAGGGTTTCTATCTTCTAATATGGACATCTCAAATTCATCCCTGAAGGTAGAGGAAGAGGACCCTCGGACTTTACTGCAGTTTCATATTGTACAGTTGCTTAGAATGGCAGGATGGTCGATTGAGAAGCGCAAACGACCTAGTAGGCGTTATGTGGAGTCGGTTTATAGGACACCAGAGGGAAAGCCTATTCGGGAGTTTACAACAGCTTGGAGATTATGTGGTCAGCTTTTATCTGTGGAAAATTTCAATTTAATGTGTGCAGACTACAAGGAATGGACTGATATTAGTCAATTCTGGTCTGATCTATCCAGGGCACTGGTAAATGTTGAAAAAACAAAGACTCAGTCTGAGCCTGCTGCTATATTGGCTTATCGATGGTGGCTTTTGGATCCTTTTGTAGTGGTTATTTTTGTCAACAGAAAGATTGGTGCACTAAAAAAGGGAGAGGTAGTGAAAGCAACTAGTAGTTTAGTTTCTACTCAGTATAAGATGGCATGTGCTCCCTTTGATTCAAGCTCTGTACCTGGAGGGTCTAAAGTAAATGCTTTTTATCAAGCTAAAACTAGAAATTCCAAAAGCTTTGATAAACAGTGTTCAGAAAATTATCTGGAAACAAATAAAAATATCAATGGAGATGTGTCGATGGACATGTCAGAGGAAAATAATGCATACAGTGTTGGCCATGGCCTCGTTCATTCTCATGACACAGAGGCTATGCAACATTCTGAATGTAGTGAGGAAGAGGGTAGGGAAATCTCAATGGCTTCTGTATTAGGGAAAGATAACACATATTCTGCTTCCAATGTTATTGTTAAAAGGAAAATGCGGAGGAAGGGCAGCAAAAGGGTATCTGAAATCAAACTGAGTAGGTTATACCATAGTGGCATGTTGGGATCAACTGTTACTGATCAGGTGCAGTCACTAAATGGTGAAACATGTGGGTTGGAAGAGGTCCAGGATTATCTTACTGACAGTGCAGGAAAGAAAAGAAACTGCAGGAAGTTATCATCTGTTGGTGGAATCCAGAGAAATAAGTCCAATGGATGCCAGATTAAAGATGATGATTTATTGGTGTCAGCAATATTCAGGAATAAGGACTTCAAAACAAAGGCAATCCGGGGTAATTCTAGTGCTAAATCCTGCAAATCAAGGGGCCAGAGAAGGCTTAAAAGCCAGAAGGGCCGTTGCAGGTTGCTACCAAGGAACCCTTGTAATGGAGGGAAGCACAATAAGGATGGAAATAGGTATTATTTGGGCACAAGGACAATCTTGTCCTGGTTGATTGAGAATGGTGTCATATCTTTAAATGATGTGATTCAATATCGAAATCCTAAGGATAATGCTGTAATTAGGGATGGTAGGATAACCAAAGATGGTATTATTTGTACATGTTGTGGTCGGGTGCTTACATTATCAGGGTTCAAGTTTCATGCTGGGTTTACACTGAATCGCCCCTGCTTAAATATTTTCATGGAGTCTGGTGAGCCCTTTACCCTGTGCCTCCTTCAAGCTTGGTCAGCTGAATACAAAGCCAGGAAAAGCCAGAATCAAGTTGTGCATGCTGATGATAATGATAAAAATGATGACTCATGCGGGCTATGTGGTGAGGGAGGTGAACTGATATGTTGTGATAACTGTCCATCTACTTTTCACCTAGCTTGTTTGTCCACTCAGGAGATCCCTGATGGCAACTGGTACTGCACTAACTGCACCTGTAGAATATGTGGAAATTTGGTCATTGATAAAGATGCTTCAGATGCACATGATTCATTGCAATGTTCACAGTGTGAAGACAAATATCATGAGAAATGCCTGAAAGAAAGAGAGAAACAAGAAGGATCGGTTTCAGACACTTGGTTTTGTAGTCAGAGTTGTCAGGAGGTATACTCTGGACTCCAATCGCAGGTGGGATTAGTTAATCAAGTTGCTGATGGCTTCTCATGGATGCTCCTTAGATGCATCCATGATGACCAAAAGGTTCATTCTGCACAGTGGTTTGCCCTAAAGGCAGTGTGCAACACAAAATTAGCTGTTGCTCTTACCATCATGGAGGAGTGTTTTGTGTCAATGTTTGATCCAAGAACTGGCATCCACATGATACCTCAAGTTTTATACAACTGGGGGTCTGAGTTTGCTCGTCTGAATTTTCAAGGGTTTTACACTGTGGTATTGGAAAAACTGGATGTGTTAATATCAGTAGCATCTATCAGGGTGCATGGAACTACAGTAGCAGAGATGCCTCTAATTGCAACTTGCAGTCAGTATCGTCGACAGGGAATGTGCCGACTCCTTGTGAGTGCAATTGAACAGATGTTAATATCTATCAAGGTAGAAAAGCTTGTGATATCAGCCATTCCAGATTTGGTTGAGACATGGACCAAGGGCTTTGGATTCTTACCTGTTGATGACATTGAAAAGAAAAGATTGAATAAAATAAACTTGATGGTTTTTCCTGGGACTGTGTTACTTGAAAAACCGTTATACAGGAAGGAGAAAATTGAAGGACCGTGTGATCAATCAGCTCTAGCAACAGATGAATCATCCAAAGTAGGCATCTGTTCTGAAGGAATGGCCATTATTGAATCGTTGCCACAAGATGTTGGAAACCTAACTACCAATGAAGTTGAAATTAAGTCAGAATATGAACCTGTAGATGGCAACGGCAATGAAACCGGCAGAGATGATAATAGTCAAGCTGTTGACACTGCATTCGGAGACAAAGAATCAACAAAAATTAGTAGCTGTTTAAGAGATCAGATCATCCAGTTAACAGTGTCGGGCGGTGCAGAAGGTTTTATTGAAGGAAACAAAGAGCAGGAATTGAAGAGCAACAAAATGCAAATGCTAAGTGAGTTGGTACAGCAATCTATTGAGAACTGTTGTGCTGACAAAGATGGTACTGAAACAGGTTTAAGAATTATTGAGGAAAAGAATATCAAAATAGGTGAAGGTCAGGAAAATGCTTTGCAGGGCCATTTTTCAAATATGTCCTGCAAAACATTTTTAGGCAGCAATTTTGACATGGATTCCAATATTGAATGCTCAGTGATGTATGATGAAACAGCTTTTTTTGGAACATTTGCCAAGTCTGCAAGTTGA 3849 0.3972 MENLCDDNFEGSIEERQIFTEVFSANDIFQSSQKSLVSGVINFDHESTKSKNTFKSFCSSNENSVVLHPSSSRLTHPEEDFNVIQQSKETALGCMPESFVCEDQNDEDVNVKRMKFSLHELACSRSDSENILSSSRLSKVVVTNLSHAASDCDSESVPFCLVESSKHGVISSCYLLKNNILNKQVAKDDDATNCKSISADGNVAKEVSVSKAVASPVSQESFANRLVVTSPSITVVKKSGSPLNPEEMPEGFLSSNMDISNSSLKVEEEDPRTLLQFHIVQLLRMAGWSIEKRKRPSRRYVESVYRTPEGKPIREFTTAWRLCGQLLSVENFNLMCADYKEWTDISQFWSDLSRALVNVEKTKTQSEPAAILAYRWWLLDPFVVVIFVNRKIGALKKGEVVKATSSLVSTQYKMACAPFDSSSVPGGSKVNAFYQAKTRNSKSFDKQCSENYLETNKNINGDVSMDMSEENNAYSVGHGLVHSHDTEAMQHSECSEEEGREISMASVLGKDNTYSASNVIVKRKMRRKGSKRVSEIKLSRLYHSGMLGSTVTDQVQSLNGETCGLEEVQDYLTDSAGKKRNCRKLSSVGGIQRNKSNGCQIKDDDLLVSAIFRNKDFKTKAIRGNSSAKSCKSRGQRRLKSQKGRCRLLPRNPCNGGKHNKDGNRYYLGTRTILSWLIENGVISLNDVIQYRNPKDNAVIRDGRITKDGIICTCCGRVLTLSGFKFHAGFTLNRPCLNIFMESGEPFTLCLLQAWSAEYKARKSQNQVVHADDNDKNDDSCGLCGEGGELICCDNCPSTFHLACLSTQEIPDGNWYCTNCTCRICGNLVIDKDASDAHDSLQCSQCEDKYHEKCLKEREKQEGSVSDTWFCSQSCQEVYSGLQSQVGLVNQVADGFSWMLLRCIHDDQKVHSAQWFALKAVCNTKLAVALTIMEECFVSMFDPRTGIHMIPQVLYNWGSEFARLNFQGFYTVVLEKLDVLISVASIRVHGTTVAEMPLIATCSQYRRQGMCRLLVSAIEQMLISIKVEKLVISAIPDLVETWTKGFGFLPVDDIEKKRLNKINLMVFPGTVLLEKPLYRKEKIEGPCDQSALATDESSKVGICSEGMAIIESLPQDVGNLTTNEVEIKSEYEPVDGNGNETGRDDNSQAVDTAFGDKESTKISSCLRDQIIQLTVSGGAEGFIEGNKEQELKSNKMQMLSELVQQSIENCCADKDGTETGLRIIEEKNIKIGEGQENALQGHFSNMSCKTFLGSNFDMDSNIECSVMYDETAFFGTFAKSAS* 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0446 1282 PANTHER INCREASED DNA METHYLATION 1 1 453 - -
Apr2g0446 1282 PANTHER INCREASED DNA METHYLATION 1 453 1280 - -
Apr2g0446 1282 SUPERFAMILY FYVE/PHD zinc finger 821 872 IPR011011 -
Apr2g0446 1282 Pfam PHD-finger 781 822 IPR019787 -
Apr2g0446 1282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 823 879 IPR013083 -
Apr2g0446 1282 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 928 1054 IPR016181 -
Apr2g0446 1282 PANTHER PHD FINGER PROTEIN 12 1 453 IPR042163 GO:0003714|GO:0045892
Apr2g0446 1282 PANTHER PHD FINGER PROTEIN 12 453 1280 IPR042163 GO:0003714|GO:0045892
Apr2g0446 1282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 771 822 IPR013083 -
Apr2g0446 1282 Pfam Tify domain binding domain 703 753 IPR032308 -
Apr2g0446 1282 SUPERFAMILY FYVE/PHD zinc finger 768 821 IPR011011 -
Apr2g0446 1282 SMART PHD_3 780 821 IPR001965 -
Apr2g0446 1282 SMART PHD_3 822 876 IPR001965 -
Apr2g0446 1282 ProSiteProfiles Zinc finger PHD-type profile. 778 823 IPR019787 -
Apr2g0446 1282 CDD PHD1_AIRE 781 820 - -
Apr2g0446 1282 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 931 1078 IPR000182 GO:0016407
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0446 Apr-Chr2 5171965 5180905 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0446 1 1082 PHD Transcription Factor Family AT3G14980 41.192 0.0 776
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr2g0446 TDBD 9.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0446 - - gmx:100777440 2055.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0446 2 5171965 5180905 Apr2g0446 2 5171965 5180905 ECH