Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0444 ATGAATTGTTTCTCTCTTTTTTTCCGGAAAAGGGGGTCTTCCTCAGCTACACAATCAACCGGATTGGATTTAGATATTTCAAGCATTCAAAATGTCAATCTTTACACTTACAAGGAATTGGATATTGCCACCGAAGGTTTCAGTCTGGCAAACAAAAAAGGGGAGGGAGGTTTTGGATCAGTTTATAAGGTTTTGTCAACTGAATCAAGACAAGGTGTCCACGAGTTCTTGACAGAAATCAAGGTGATCAGTAGTATAGAGCATGAGAATTTAGTTAAGTTGTACGGATGTTGTGTGGAAGGAAACCACAGGATTTTGGTATATGGCTATCTTGAGAATAACAGCCTAGCACAAACACTTCTACGTAGGGGCCATAGTAGCATCCTATTCAGTTGGCATATACGTCGTAACATCTGCATTGGTGTTTCCCGTGGCCTTGCATTCCTTCATGATGAAGTTCAGCCACATATTATTCATAGAGACATTAAAGCAAGCAATATACTACTCGATAAAGATCTCCAGCCCAAAATTTCAGATTTTGGTCTAGCAAAGCTTATTCCACCAAATCTCACCCATATTAGTACACATGTTGCTGGAACATTTGGCTATGTGGCGCCTGAATATGCAATACGGAATCAGGTGACTAGAAAATCAGATGTCTATAGTTTTGGAGTTCTACTACTAGAAATTGTTAGTGGGAGGGCTAACACGAACAGACATTTACTTGCCGAAGAACGGTATCTTCATATAAGGGCATGGGATTTGTATGAGAAGGGGGAGTTGGATAGTTTGGTGGATGTATCTCTAGACAGAGACTTCAATGTTGAGGAGGCAATAAGATTTTGTAAAATTGGTCTTCTTTGCATTCAAGATTCTCTTCAGCTCCGACCTTCTATGTCCACTGTGTTTGACATGCTGATTGGAAAAAGGGATGTGAATGAGGAGAAGATGACAAAACCTTACTTAATATTTCAGTTTGTGGAGGCCAAAGACCAAGGGAAACAGAAAGGCAAGGCTGAAGTAGAAGAAACGTCTCTTTTGGCTGGTTCAGAGAGGCAAGATGATTCATCTTTATCAGGAACCATGAGTTCTTTTGCGACTATGACCTTCACATCAATTTATGACCGAAGCAATTAG 1137 0.4019 MNCFSLFFRKRGSSSATQSTGLDLDISSIQNVNLYTYKELDIATEGFSLANKKGEGGFGSVYKVLSTESRQGVHEFLTEIKVISSIEHENLVKLYGCCVEGNHRILVYGYLENNSLAQTLLRRGHSSILFSWHIRRNICIGVSRGLAFLHDEVQPHIIHRDIKASNILLDKDLQPKISDFGLAKLIPPNLTHISTHVAGTFGYVAPEYAIRNQVTRKSDVYSFGVLLLEIVSGRANTNRHLLAEERYLHIRAWDLYEKGELDSLVDVSLDRDFNVEEAIRFCKIGLLCIQDSLQLRPSMSTVFDMLIGKRDVNEEKMTKPYLIFQFVEAKDQGKQKGKAEVEETSLLAGSERQDDSSLSGTMSSFATMTFTSIYDRSN* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0444 378 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 364 - -
Apr2g0444 378 Gene3D Transferase(Phosphotransferase) domain 1 111 322 - -
Apr2g0444 378 SMART serkin_6 47 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0444 378 Gene3D Phosphorylase Kinase; domain 1 11 110 - -
Apr2g0444 378 ProSiteProfiles Protein kinase domain profile. 47 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0444 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Apr2g0444 378 SUPERFAMILY Protein kinase-like (PK-like) 24 307 IPR011009 -
Apr2g0444 378 CDD STKc_IRAK 54 306 - -
Apr2g0444 378 Pfam Protein kinase domain 62 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0444 378 PANTHER RECEPTOR-LIKE KINASE 3 364 - -
Apr2g0444 378 MobiDBLite consensus disorder prediction 338 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0444 Apr-Chr2 5158339 5163754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0444 6 322 Receptor kinase-like Gene Family AT1G56120 50.152 1.07e-95 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr2g0444 Pkinase 4.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0444 - - gmx:100801735 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0444 2 5158339 5163754 Apr2g0444 2 5158339 5163754 ECH