Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0441 ATGATTAACAACGGAGTCTGCAGTCTCCGCACGTGTCTCCGTTTCCCGGAGAGACCTCTATTCCTACCATCGCCGCGCTCATTCAGTTGCCGGCGGCGGTTTCGTACCACTGCATCCGAAACCAACAAGAAAGAGAAGGTGGTTGTGATTTCTGGACCCACCGGTTCCGGCAAGAGCCGCCTTGCATTGGAACTCGCTAAGCGCCTTAACGGCGAAATCGTCAGCGCCGACTCCGTTCAGGTATATCGAGGTCTTGATGTTGGATCTGCAAAGCCTTCTCCAAATGATAGAAAGGAAGTACGGCATCATCTGATTGACATACTGCACCCATCTGAAGACTATTCTGTTGGGCAGTTTTTTGAGGATGCAAGGCATGCTACAAGACGTATTCTTGACAATGGCCATGTTCCCATTGTTGTTGGGGGCACTGGATTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTACCTAAAGCCTCTCCAGATATTTCATCTGAAGCATATCAAGAGTTAGCTGAACTACAAAGGAATGAGGACTGGGATGCAGCTGTGCAGTTGGTGGTAAAAGCAGGTGATCCAAAGGCCCAATTTCTAACAATGAATGATTGGTACCGATTACGGCGTAGCCTAGAGATTATTAAGTCTAGTGGATCACCTCCTTCTGCTTTTCCAGTACCGTATGATTCTTTCAGGGAACAGGGTGATTGTAGTCTTGCCGATGATTCTGCGTCTTCTGATATGAACCCATATGGTGATGCAATGGATGAAACCAAATTGTCAGAGTTAGACTATGAGTTTATGTGTTTTTTCCTTTCTAGCCAAAGACTTGACCTCTATAAGTCAATTGATTATCGGTGTGAAGATATGCTACTAGGAAGGGATGGGATTTTGTCTGAGGCTCGATGGCTTCTTGATACTGGTCTTAATCCAAACTCCAATTCTGCAACAAAAGCAATTGGTTACAGACAAGCCATGGAGTACTTACTAAAATGCAGACAGCAACAGGGTGAGAGTTCAGTTGGAGAATTTTACAAATTCTTGTTTGAATTTCAAAAAGCATCACGGAATTTTGCTAAAAGGCAGTTGACATGGTTTCGCAATGAACAGATATACCACTGGCTTGATGCTTCTAAACCTCTGGAAACCATTCTCGATTTCATTCATGGCTCATACTATGATAGGAATGGAAGTCTTCTTGTTCCTGAACACCTAAAAATGTCGAGAGATATTTCTAATCACAAAGAAGCTTCTAAACTTAAGTCTTACCGCACTAAAAATAGGCATTTTGTAAACGGGGAAGATTGTTCTCATATTCTGGACTGGATAAGGAAGACTCAGAGGTGA 1347 0.4336 MINNGVCSLRTCLRFPERPLFLPSPRSFSCRRRFRTTASETNKKEKVVVISGPTGSGKSRLALELAKRLNGEIVSADSVQVYRGLDVGSAKPSPNDRKEVRHHLIDILHPSEDYSVGQFFEDARHATRRILDNGHVPIVVGGTGLYLRWFIYGKPDVPKASPDISSEAYQELAELQRNEDWDAAVQLVVKAGDPKAQFLTMNDWYRLRRSLEIIKSSGSPPSAFPVPYDSFREQGDCSLADDSASSDMNPYGDAMDETKLSELDYEFMCFFLSSQRLDLYKSIDYRCEDMLLGRDGILSEARWLLDTGLNPNSNSATKAIGYRQAMEYLLKCRQQQGESSVGEFYKFLFEFQKASRNFAKRQLTWFRNEQIYHWLDASKPLETILDFIHGSYYDRNGSLLVPEHLKMSRDISNHKEASKLKSYRTKNRHFVNGEDCSHILDWIRKTQR* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0441 448 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 9 37 447 - -
Apr2g0441 448 Gene3D - 156 225 - -
Apr2g0441 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 177 IPR027417 -
Apr2g0441 448 Pfam IPP transferase 80 369 - -
Apr2g0441 448 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 37 447 IPR039657 -
Apr2g0441 448 Gene3D - 44 434 IPR027417 -
Apr2g0441 448 TIGRFAM miaA: tRNA dimethylallyltransferase 47 224 IPR018022 GO:0008033
Apr2g0441 448 Hamap tRNA dimethylallyltransferase [miaA]. 47 386 IPR018022 GO:0008033
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0441 Apr-Chr2 5136507 5143054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0441 50 224 C2H2 Transcription Factor Family AT2G27760 27.869 8.11e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0441 K00791 - gmx:100808814 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0441 2 5136507 5143054 Apr2g0441 2 5136507 5143054 ECH