Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0430 ATGGATCAAATGACGGATTCTGAAATGGATCAACAGAGGCAAGGCTATTTTCATTCTGAACCCTGCATCCTTATGAGAGGCTCCTCAAGCATCTCGCAGTCCAATATCCGCACAATGGTGACCGCTTCAGGAAACACAAATGTTGATTCTCACTATTTACCGGATGCTTATGACAATGTTAGGGTGTATGGAGTTACACAATACAATGGCATTCAGCCTCCACATAATCTTGATATGGGTGTACCAGCTGCAGCAAACTTATATTATTCTGGCATGAATCCTTCTTCTAGTACTGGTGTTTTCCCTCTGCCTCTAAATCACAGAGCCTCTGATTTGCCAGGTTCAAGCACATTTGCAGTCTCTGGAGTTTCTTCAGATAATTTTGGAAGAAGTTCTGGTTTCATGGATGACGTTAGAGGTCCATACAAAAGGAAAAATGCTGAAGGGATTAGAGGAAGTTACCAGTATTTTAATGCTTCAGCTAGTTCTTCTATTACTCCCCCTAATGCTAGACACACTGATGGCGTTGCTATGATGGATGCTGCATCATTTTCATTCCGCACCCCATCACTTGTGGAAGTTGGAGCACATGGTAGTGCATGGAGCAGGTCAGGTGAGTCTATTATGGTGCATGACCATAATCATTTGATTCATGGAAACTATTTAGGGCAGCACTTTCAGCCAGCTGCCCCTCCCTGGTTGGACCTACAATTGAATAGTAATAATAACGATGCCCATACTACAGCCTGGAATCCGTCCCTTCCCATGCCTTATATACCAGCACACAATGTTAATGGAAGTTCATTAGAGAGTGCAAATATGGGCTTGCAGAGATATCATGATCCAGCTGGCAGCCGAAATGGGCTCAGATTTCCTCATCCTCTTCCTGTCAACCAACAGCACCATAATTACCATCATCCAGCATTGCCTATGCAAGGAGTAAGAGGTCACAATCACAATATCAACTTTCACCCTCCGGTAACTGCAGCTTCATTTAGAGTTCCAACACATCCTTCACGCAGTGTTGCCATCCCGATACAGACTGGTTTTGAGATGGGTCCTAGGCATGTTGGTACTGCACCATCAGCTGGCCTCCGGATTTACAGACCTCATAGAGGAGTTGTGCCTGAGACAACTCTTGGACATCGTGGCCTTCCCCCGGTGGGCTTCCTCCAAGTTGATGATGTTGCTTTAATTGATGAAGTGGGAAATTTGGTTGACCATCACAGAGATATGCGCTTGGACATAGAGGACATGTCTTATGAGGATCTTCTTGCACTGGGTGAGCGGATTGGCAATGTAAGCACTGGCTTATCAGAGGAAACAATTACTACTCAGTTGAAGACAAAAACTTATTTACTGTGTGCTTCTGCTATTAATCTGGAGGAGGCAGCTAGTGATGATCAAGAAACTGATTCTTGTATAATATGTCAGGATGAATTTAAGAACCAAGAGAAGATTGGAGTTCTTCGATGTGAGCATGAATATCATGCAGAGTGCTTAAAGAAATGGTTGCTTGTCAAAAATGTCTGCCCCATATGCAAATCAGAAGCTTTAACTCCTGGAAGGAGGGATGTATAG 1581 0.4383 MDQMTDSEMDQQRQGYFHSEPCILMRGSSSISQSNIRTMVTASGNTNVDSHYLPDAYDNVRVYGVTQYNGIQPPHNLDMGVPAAANLYYSGMNPSSSTGVFPLPLNHRASDLPGSSTFAVSGVSSDNFGRSSGFMDDVRGPYKRKNAEGIRGSYQYFNASASSSITPPNARHTDGVAMMDAASFSFRTPSLVEVGAHGSAWSRSGESIMVHDHNHLIHGNYLGQHFQPAAPPWLDLQLNSNNNDAHTTAWNPSLPMPYIPAHNVNGSSLESANMGLQRYHDPAGSRNGLRFPHPLPVNQQHHNYHHPALPMQGVRGHNHNINFHPPVTAASFRVPTHPSRSVAIPIQTGFEMGPRHVGTAPSAGLRIYRPHRGVVPETTLGHRGLPPVGFLQVDDVALIDEVGNLVDHHRDMRLDIEDMSYEDLLALGERIGNVSTGLSEETITTQLKTKTYLLCASAINLEEAASDDQETDSCIICQDEFKNQEKIGVLRCEHEYHAECLKKWLLVKNVCPICKSEALTPGRRDV* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0430 526 SMART ring_2 474 514 IPR001841 -
Apr2g0430 526 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 458 524 IPR013083 -
Apr2g0430 526 ProSiteProfiles Zinc finger RING-type profile. 474 515 IPR001841 -
Apr2g0430 526 Pfam Ring finger domain 472 515 IPR001841 -
Apr2g0430 526 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 127 523 IPR045191 GO:0061630
Apr2g0430 526 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 127 523 - -
Apr2g0430 526 SUPERFAMILY RING/U-box 468 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0430 Apr-Chr2 5004843 5008346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0430 391 519 C3H Transcription Factor Family AT2G15530 45.185 7.29e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0430 K19041 - gmx:100800642 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0430 2 5004843 5008346 Apr2g0430 2 5004843 5008346 ECH