Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0416 ATGGACAACTACTACCCCCACTTGGACAACACTGAGGCTCATTTGCCACCTGGTTTTCGATTCCACCCCACGGATGAGGAACTCATCACCTACTACCTTCTCAAGAAGGTTCTAGACAGCACCTTCACTGGTAGAGCCATAGCTGATGTTGACCTTAACAAGTGTGAGCCATGGGAGCTCCCTGAGAAAGCGAAGATGGGTGAGAAAGAGTGGTACTTCTTCAGCTTACGCGACAGAAAGTACCCAACTGGGTTAAGAACCAATAGGGCTACTGAAGCTGGTTACTGGAAAGCCACTGGGAAAGATAGAGAGATTTACAGCTCCAAGACATGTTCTCTTGTGGGCATGAAGAAAACCCTTGTTTTCTACCGTGGTAGAGCACCCAAAGGAGAGAAAAGCAACTGGGTCATGCATGAGTATCGCCTTGAAGGCAAATTTGCGTACCACTACCTCTCTAGGAACTCCAAGGATGAGTGGGTCATATCTCGTGTGTTCCAGAAGAGTAACACAGGAAATGGAGGCTCCAGCGTGTCTGTTACAAGCGGTTCAAAGAAGACAAGAATTAACAGCACCACTAACTCTACAAACATGAGTCTTTGCCCTGAACCAAGTTCTCCTTCTTCTGTTTATCTTCCACCATTGCTAGATTCTTCTCCTTACCCCAACACCACAAACTTCAACGACCGTCACAACTGTTCCTATGACAGCACCACTCAAAGAGAGCACGTGTCCTGTTTCTCCACAGTTTCTTCAGCTTCAGCTGCTGTTTCTAACAACGCCTTCAATAATGCAAGCTTTGACCTTACTACTCAGCACCTCACTAGTGACCCTTTTGCTAGGTTCCAGAGAAACGTTGGTGTCTCAGCTTTCCCAAGCTTGAGATCACTGCAAGATAACCTTCAGCTTCCGTTCTTTTTCTCCCCGGCGGCGCAGCCTTTCTCAGGCGGGGGTTCCGGTGACTTTCCTGGTTGGCCTTTGCCGGAGGAACAAAGGGTGGCTGAAGTTGGATCCAACGTGGCATTGGGGTCTTCGGAGCTTGATTGCATGTGGGGTTACTGA 1059 0.4844 MDNYYPHLDNTEAHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIADVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNSKDEWVISRVFQKSNTGNGGSSVSVTSGSKKTRINSTTNSTNMSLCPEPSSPSSVYLPPLLDSSPYPNTTNFNDRHNCSYDSTTQREHVSCFSTVSSASAAVSNNAFNNASFDLTTQHLTSDPFARFQRNVGVSAFPSLRSLQDNLQLPFFFSPAAQPFSGGGSGDFPGWPLPEEQRVAEVGSNVALGSSELDCMWGY* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0416 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 348 - -
Apr2g0416 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 5 348 - -
Apr2g0416 352 ProSiteProfiles NAC domain profile. 15 167 IPR003441 GO:0003677|GO:0006355
Apr2g0416 352 SUPERFAMILY NAC domain 12 167 IPR036093 GO:0003677|GO:0006355
Apr2g0416 352 MobiDBLite consensus disorder prediction 171 204 - -
Apr2g0416 352 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Apr2g0416 352 Gene3D NAC domain 24 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0416 Apr-Chr2 4903256 4905028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0416 1 352 NAC Transcription Factor Family AT5G53950 55.725 5.81e-118 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr2g0416 NAM 9.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0416 - - gmx:100805987 507.294