Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0412 ATGGAGGGTAGGAGCATAGAGAGGAAGCAAATATCTATGGAGAATGTGAGGAAGGAAAGCACAATTGAAGTAGTAGAAGATGAAGAAGAGGAGGAAGATGAGAGTGGGGGTGGTGGTGTTGTAGAATATGAGAAGAAGAAAGGTTGCGGAGGGAGTGGGAGAAGAGGGTCAAGTGGTAGTGGAGGAGTTTCTTCACCTTCTTGTCAGGCAGAGGAGTGTGGTGCTGATTTAACTGCTGCAAAGAGGTACCATCGCCGCCATAAGGTGTGTGAGCTTCATTCCAAGGCACCTGTTGTGATGGTAGCAGGCTTGAGACAAAGATTTTGTCAGCAATGTAGCAGATTCCATGAACTGGTAGAGTTTGATGAAGCCAAAAGGAGCTGCCGGAGACGCTTGGCAAGACACAATGAGCGGCGCCGGAAAAGCAATGCTGAAACTTGCAATGAAGGATGCAATAGCAACAAAGGGCAACACCCTAATGAAAGCCACTGCAGAAACGTTGATGATTGGAAAAAAATTCAGATGAATATGGGAAGGAGTACTGGTTACAAGTCCTTCCATATCAGATGA 570 0.4632 MEGRSIERKQISMENVRKESTIEVVEDEEEEEDESGGGGVVEYEKKKGCGGSGRRGSSGSGGVSSPSCQAEECGADLTAAKRYHRRHKVCELHSKAPVVMVAGLRQRFCQQCSRFHELVEFDEAKRSCRRRLARHNERRRKSNAETCNEGCNSNKGQHPNESHCRNVDDWKKIQMNMGRSTGYKSFHIR* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0412 189 Pfam SBP domain 68 141 IPR004333 GO:0003677
Apr2g0412 189 MobiDBLite consensus disorder prediction 143 163 - -
Apr2g0412 189 Gene3D - 58 129 IPR036893 GO:0003677|GO:0005634
Apr2g0412 189 MobiDBLite consensus disorder prediction 1 69 - -
Apr2g0412 189 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 152 IPR044817 GO:0003677
Apr2g0412 189 MobiDBLite consensus disorder prediction 146 160 - -
Apr2g0412 189 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 152 - -
Apr2g0412 189 ProSiteProfiles Zinc finger SBP-type profile. 65 142 IPR004333 GO:0003677
Apr2g0412 189 MobiDBLite consensus disorder prediction 1 23 - -
Apr2g0412 189 SUPERFAMILY SBT domain 66 146 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0412 Apr-Chr2 4843679 4844994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0412 6 182 SBP-box Gene Family AT3G60030 43.575 2.33e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Apr2g0412 SBP 8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0412 - - gmx:100815775 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0412 2 4843679 4844994 Apr5g0124 5 1118038 1119433 ECH
Apr2g1904 2 24539727 24541372 Apr2g0412 2 4843679 4844994 ECH
Apr2g0412 2 4843679 4844994 Apr1g1438 1 23709663 23711589 ECH
Apr2g0412 2 4843679 4844994 Apr3g1782 3 33650360 33652550 ECH
Apr2g0412 2 4843679 4844994 Apr2g0412 2 4843679 4844994 ECH