Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0410 ATGATGCTGCTCAGATGTTTCTCAGTGATACTTTTGCAGTGGTGTGTCTTAGCTTGCTTACTTTGCTTGTCTCTGGGTCTTAGCAACCAAACCACATCCTGTGACCCTCATGATTTATCAGCCCTAAAGGAGTTTGCAGGAAAGCTTACAAGTGGCTCTATCATCACAGCATGGTCCAATGACAGTGTCTGTTGCAACTGGGTTGGAGTTGTTTGTGATAATGTGACTGGTGGTAATGGAGCAGGTGCTAGTACTAGTAGAGTGACCAGGTTGATTCTGCCTGAAATGGGTCTCAGTGGGACAATTTCACCCTCTTTAGCACAGCTAGATCAGCTCATTGTGCTGAATTTTTCATACAATCATCTTAAAGGTGAATTGCCTGTGGAGTTCTCCAAGTTAAAGCAGTTGAAGTTTCTTGATGTGAGCCATAATATGCTGTCAGGATCTGTTGCTGGAACTCTTTCTGGTTTGCAATCAATTGAAATATTGAACATTTCTAGTAATTCACTTTCTGGAGTTCTCTTCCAGTTTGGGGAATTTCCACGTCTCCTTGCTCTCAACATGAGTAACAATTCATTCACTGGCAGATTCAACTCTCAAATTTGCAGTTCTTCCAAGGGTCTTCTCACCCTTGATTTATCTGCAAATCAATTTGATGGTGATCTTGAAGGTTTGGACAACTGCACCACATCTCTCCGACAGTTGCATTTGGATTCCAATTCATTTTCTGGCCCTATTCCAGATTCCTTGTATTCAATGTCAACCTTGGAGGAACTCTCAGTCTCTGCCAACAATTTATCTGGCCAGTTAAGCAGGCAACTCAGTAAGCTCTCTAATCTAAAAGCTTTAGTGGTTTCTGGGAACAGGTTTTCAGGGGAAATCCCAAATGTGTTTGGGAACCTTTTGCAGCTAGAAGAATTTGTAGCACATGCCAATTTATTTTCTGGATCGTTGCCTTCCACCTTGGCTTTATGCACTAAACTTAGGGTGCTTGATCTTCGAAATAACTCCTTGTCAGGTCTTATTGATCTTAATTTCACTGGCTTGTCTAATCTTCAAACACTTGACCTTGCTACTAATCATTTCATTGGACCCCTTCCAAATTCCCTGTTCAAGTGCAGTGAATTGAAAGTTTTAAGCCTTGCTAGGAATGGTTTAACTGGCCCTATACCTGAAAATTATGCCAACCTCACGTCACTTTTATTTGTATCCTTGTCAAACAACAGCATTGTGAACTTGTCAAGGGCGGTGTCTGTTCTGCAGCAGTGCAAAAACCTCACCACTCTTATCCTCACCAAAAATTTTCATGGTGAGGAAATTCAAGAAAGTGTGTCAGCAAGATTTGAGAATCTAATGATTTTAGCACTTGGATATTGTGGTCTTAAAGGCCATATTCCTTCTTGGCTATCAAATTGCAGAAAATTGGCCGTCCTTGATTTGTCTTGGAACCATTTGAATGGTAGTATTCCTTCTTGGATTGGTCAGATGGACAATTTGTTCTATTTGGATTTCTCAAATAATTCTCTCTCTGGAGAAATACCAAAAAGTTTGACAGAGTTGAAGGGCCTCATGTGTTCAAATTGTAGTAGATCTAATCTTTCTGCTTTTGCATTCATTCCTCTCTTTGTTAAGAGAAACACAAGTGCGAGTGGGCTGCAATATAACCAGGCCTCAAGCTTCCCTCCTTCAATTCTTCTGAGCAATAACATATTAACTGGAAATATTTGGCCTGATATTGGTCAACTGAAAGCACTGCATGTCGTAGATTTAAGCAGGAACAACATCACTGGTCCCATTCCCAGCACTATTTCAGAGATGAAGAACTTGGAATCATTAGATTTATCTTACAATGATCTCTCTGGAGAAATCCCTCCATCATTTAACAACCTCACATTCTTATCAAAGTTCAGTGTGGCATATAATCGCTTACAAGGACCAATTCCAACCGGGGGACAGTTTTTAAGCTTCCCTAGTTCAAGCTTTGAGGGAAACCTGGGGCTTTGTAGGGAAATTGATTCTCCCTGCAAAGTTGTCAACAATGTGACGCCCAACATTTCTTCTGGTTCATCCAGAAAACTTGGTAAAAGCAATGTCCTTGGCATAACAATCAGTATAGGGATAGGGCTTGCACTGCTGCTTGCAATTATTCTGCTAAGAATGTCAAAGAGGGATGGGGATAAGCCTGTTGATAACTATGATGAGGAACTCAATAGCAGGCCACACAGGTTTTCTGAAGCACTTGTTTCTTCAAAGTTGGTGCTTTTTCAGAACTCTGATTGTAAGGACCTCACAGTTGCAGATTTGGTAAAATCCACAAACAATTTCAACCAGGCAAATATTATTGGTTGTGGTGGGTTTGGTCTTGTCTACAAGGCATACCTTCCAAATGGTACAAAAGCAGCTGTCAAGAGACTTTCAGGGGACTGTGGTCAGATGGAACGTGAATTCCAAGCTGAACTAGAGGCCCTCTCAAGAGCTCAACACAAGAACCTTGTTTCTCTTAAAGGTTATTGCCGGCATGGTAGTGACAGATTGCTAATCTACTCATACTTAGAGAATGGAAGCTTGGATTATTGGCTACATGAGTGTGTGGATGAAAATTCAGCTCTAAAATGGGATGCAAGGCTCAATATTGCACAAGGCGCTGCTCGTGGATTAGCTTACTTGCATAAGGGGTGTGATCCATACATAGTGCATCGAGATATTAAATCTAGCAACATACTTTTGGATGATAAGTTTGAAGCTCATTTGGCTGATTTTGGTCTCTCAAGGCTACTTCAACCTTATGATACTCATGTTACAACAGATTTAGTAGGAACTTTAGGATATATTCCTCCAGAATATAGTCAGACACTGACAGCAACCTTCAGGGGTGATGTTTATAGTTTCGGTGTTGTTCTTCTTGAGCTGCTTACTGGTCGAAGGCCTGTAGAAGTCATCAAGGGGAAAAATTGCAGAAATCTGGTATCTTGGGTGTTTCAAATGAAATTTGAGCATAAGGAGCAGGAAGTTTTTGATCCAGCCATTTGGCAGAAGGATCATGAGAAACAGCTGTTGGAGGTGCTTGCCATTGCATGTAAATGTCTAGACCAAGATCCCAGGCAGAGACCCTCTATGGAAGTAGTTGTTTCATGGCTTGATAGTGTAAGATTTGATGGCTCTCAACAGTGA 3171 0.4115 MMLLRCFSVILLQWCVLACLLCLSLGLSNQTTSCDPHDLSALKEFAGKLTSGSIITAWSNDSVCCNWVGVVCDNVTGGNGAGASTSRVTRLILPEMGLSGTISPSLAQLDQLIVLNFSYNHLKGELPVEFSKLKQLKFLDVSHNMLSGSVAGTLSGLQSIEILNISSNSLSGVLFQFGEFPRLLALNMSNNSFTGRFNSQICSSSKGLLTLDLSANQFDGDLEGLDNCTTSLRQLHLDSNSFSGPIPDSLYSMSTLEELSVSANNLSGQLSRQLSKLSNLKALVVSGNRFSGEIPNVFGNLLQLEEFVAHANLFSGSLPSTLALCTKLRVLDLRNNSLSGLIDLNFTGLSNLQTLDLATNHFIGPLPNSLFKCSELKVLSLARNGLTGPIPENYANLTSLLFVSLSNNSIVNLSRAVSVLQQCKNLTTLILTKNFHGEEIQESVSARFENLMILALGYCGLKGHIPSWLSNCRKLAVLDLSWNHLNGSIPSWIGQMDNLFYLDFSNNSLSGEIPKSLTELKGLMCSNCSRSNLSAFAFIPLFVKRNTSASGLQYNQASSFPPSILLSNNILTGNIWPDIGQLKALHVVDLSRNNITGPIPSTISEMKNLESLDLSYNDLSGEIPPSFNNLTFLSKFSVAYNRLQGPIPTGGQFLSFPSSSFEGNLGLCREIDSPCKVVNNVTPNISSGSSRKLGKSNVLGITISIGIGLALLLAIILLRMSKRDGDKPVDNYDEELNSRPHRFSEALVSSKLVLFQNSDCKDLTVADLVKSTNNFNQANIIGCGGFGLVYKAYLPNGTKAAVKRLSGDCGQMEREFQAELEALSRAQHKNLVSLKGYCRHGSDRLLIYSYLENGSLDYWLHECVDENSALKWDARLNIAQGAARGLAYLHKGCDPYIVHRDIKSSNILLDDKFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVFQMKFEHKEQEVFDPAIWQKDHEKQLLEVLAIACKCLDQDPRQRPSMEVVVSWLDSVRFDGSQQ* 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0410 1056 SUPERFAMILY RNI-like 229 541 - -
Apr2g0410 1056 SMART LRR_typ_2 606 629 IPR003591 -
Apr2g0410 1056 SMART LRR_typ_2 496 520 IPR003591 -
Apr2g0410 1056 SMART LRR_typ_2 349 373 IPR003591 -
Apr2g0410 1056 SMART LRR_typ_2 397 420 IPR003591 -
Apr2g0410 1056 SMART LRR_typ_2 133 156 IPR003591 -
Apr2g0410 1056 SMART LRR_typ_2 277 300 IPR003591 -
Apr2g0410 1056 SMART LRR_typ_2 109 132 IPR003591 -
Apr2g0410 1056 SMART LRR_typ_2 325 348 IPR003591 -
Apr2g0410 1056 PANTHER PHYTOSULFOKINE RECEPTOR 2 32 167 - -
Apr2g0410 1056 PANTHER PHYTOSULFOKINE RECEPTOR 2 619 1049 - -
Apr2g0410 1056 PANTHER PHYTOSULFOKINE RECEPTOR 2 564 623 - -
Apr2g0410 1056 PANTHER PHYTOSULFOKINE RECEPTOR 2 286 443 - -
Apr2g0410 1056 PANTHER PHYTOSULFOKINE RECEPTOR 2 172 286 - -
Apr2g0410 1056 PANTHER PHYTOSULFOKINE RECEPTOR 2 440 523 - -
Apr2g0410 1056 Gene3D Ribonuclease Inhibitor 305 377 IPR032675 -
Apr2g0410 1056 Gene3D Phosphorylase Kinase; domain 1 738 850 - -
Apr2g0410 1056 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Apr2g0410 1056 SUPERFAMILY L domain-like 34 308 - -
Apr2g0410 1056 Gene3D Transferase(Phosphotransferase) domain 1 851 1055 - -
Apr2g0410 1056 ProSiteProfiles Leucine-rich repeat profile. 608 630 IPR001611 GO:0005515
Apr2g0410 1056 Pfam Leucine rich repeat 327 386 IPR001611 GO:0005515
Apr2g0410 1056 Pfam Leucine rich repeat 584 643 IPR001611 GO:0005515
Apr2g0410 1056 Pfam Leucine rich repeat 231 290 IPR001611 GO:0005515
Apr2g0410 1056 SMART serkin_6 775 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0410 1056 Gene3D Ribonuclease Inhibitor 378 681 IPR032675 -
Apr2g0410 1056 SUPERFAMILY Protein kinase-like (PK-like) 757 1046 IPR011009 -
Apr2g0410 1056 CDD STKc_IRAK 781 1047 - -
Apr2g0410 1056 SMART LRR_sd22_2 253 282 - -
Apr2g0410 1056 SMART LRR_sd22_2 205 227 - -
Apr2g0410 1056 SMART LRR_sd22_2 606 632 - -
Apr2g0410 1056 SMART LRR_sd22_2 496 522 - -
Apr2g0410 1056 SMART LRR_sd22_2 325 346 - -
Apr2g0410 1056 SMART LRR_sd22_2 133 159 - -
Apr2g0410 1056 ProSitePatterns Protein kinases ATP-binding region signature. 781 803 IPR017441 GO:0005524
Apr2g0410 1056 SUPERFAMILY RNI-like 490 649 - -
Apr2g0410 1056 PRINTS Leucine-rich repeat signature 328 341 - -
Apr2g0410 1056 PRINTS Leucine-rich repeat signature 606 619 - -
Apr2g0410 1056 Pfam Protein kinase domain 776 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0410 1056 ProSiteProfiles Protein kinase domain profile. 775 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0410 1056 Gene3D Ribonuclease Inhibitor 33 304 IPR032675 -
Apr2g0410 1056 ProSitePatterns Serine/Threonine protein kinases active-site signature. 897 909 IPR008271 GO:0004672|GO:0006468
Apr2g0410 1056 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 619 1049 - -
Apr2g0410 1056 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 286 443 - -
Apr2g0410 1056 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 440 523 - -
Apr2g0410 1056 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 167 - -
Apr2g0410 1056 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 564 623 - -
Apr2g0410 1056 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 172 286 - -
Apr2g0410 1056 ProSiteProfiles Leucine-rich repeat profile. 327 348 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0410 Apr-Chr2 4820047 4824544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0410 38 411 Receptor kinase-like Gene Family AT1G55610 25.408 1.98e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Apr2g0410 Pkinase 4.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0410 - - gmx:100797812 1779.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0410 2 4820047 4824544 Apr2g0410 2 4820047 4824544 ECH