Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0399 ATGGGTTGCATGTGTTGCAAGCCTTCTGCCATTGAGGACAGTAAGGAGAGTCCAAGGGAGCGTTTATCAAGTAAGGTCGCGTCGGATTTGTGTATATCTAGGGGAACTTCATCAAGGAGGGAGGAAGTGTATCGAGTAAAGGATAGATATGATAACAACGATGGAAGAACTGCGTTGATTGATAAGCAAGGGAATGGTTCTGTCAGAGTGCAAGGTGATGGTTTTGAAAGGAAGAGGGAGAAAACGGAATATGCTGTTGCTCAACATCCTGGGATTGGTAGTATTCCCAAAGCCATGGAAGGGGAGCAGGTTGCAGCTGGATGGCCCTCATGGCTGGCATCGGTGGCTGGAGAGGCTATCAAGGGATGGCTGCCACGGCGTGCTGATTCTTTTGAGAAGTTGGATAAAATTGGACAGGGAACTTATAGCAATGTTTATAGAGCTCGTGATCTTGAACAAAGAAAGATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAACCTGAGAGTGTTCGTTTCATGGCGAGGGAGATTCACATTCTGCGTAGGCTCGATCATCCAAATGTCATAAAACTGGAAGGCTTGGTTACATCAAGGATGTCTTGCAGCTTATACCTTGTTTTTGAGTATATGGAGCATGACTTGGCTGGGCTTGCATCGCATCCTGGACTAAAGTTTACTGAAGCACAGGTTAAATGTTACATGCAGCAACTTTTACGCGGACTTGATCACTGCCACAGCTGTGGTGTATTGCACCGTGACATTAAGGGTTCCAATCTTTTGATTGACAACAACGGAATATTGAAAATTGCTGACTTTGGTTTGGCAAGCTTTTATGATCCCAATCAAACTCAGCCACTGACAAGCCGAGTTGTCACTCTTTGGTATAGGCCACCAGAGCTTTTACTTGGAGCCACTTATTATGGCACTGCTGTAGATTTATGGAGCACAGGTTGCATACTTGCTGAGCTATATGCTGGCAAGCCTATAATGCCTGGAAGAACTGAGGTGGAGCAATTACATAAAATTTTTAAACTTTGTGGTTCACCTTCTGAGGACTATTGGAGAAAATCAAAGTTGCCTCATGCAACAATATTTAAGCCTCAACAGCCCTATAGGCGTTGCGTTGGTGAAACTTTCAAGGATTTTCCTGCACCGGCAATAGAATTGATAGAGACTCTTTTATCTATAGATCCTGCTGATCGTGGAACTTCAGCATCTGCTTTGAATAGTGAGTTCTTCTCGACAAAGCCTCTACCTTGTGATCCCTCAAGCTTACCAAAATATCCTCCTAGCAAAGAATTTGATGCCAAAGTGCGGGATGAAGAAGCTAGAAGACAAGGAGCAGCAGGAAGCAAGGGCCAGAGACATGATCTTGAGAGAAGAGGTGCAAGAGAATCACGAGCCATTCCTGCACCCGATGCCAATGCTGAATTGGTCTTGTCAATGCAGAAGAGACAAGCACAGACTAATTCTCAAAGCAGGAGTGAGAAGTTTAACCCACATCCTGAAGAAGTTGCTTCTGGATTTCCCATTGATCCCCCTAGACCATCTCAAGCGGCAGAAGTAAGTTTGGATCCGCAGGTACATCAACACAAAAGAGCCTCCCATTCAGGTCCACTGACTCACCGCGCTGCATGGGCTAAAGCTGGGAAGAACCAGGACGACGCTCCAAAGATTTCAATGGGGGGTGACTTATCAACAATCTCAGGCTTAGTTGCAGCAAGGAGGAGTATGTTGTCTGATGATCGCAGAGAAAGGTCTGGATCATCACAAGGGGAGGCTCCAAAACTTATAAGCAGATTCCCAGGATCCTTCAAGGAAGCCTCTGAATCAATGATGCAACAGGATCAGAAGCATCATGTACATGCTCCTCAAAAGGAAGAAGGGAGAAGTAGCAACAGAGACTCAAATCTTGTTGGTTATGGGTCCAAGGGTCATAAAATTCATTATTCTGGTCCTTTGCTAGTTCCGTCAAGCAACATGGATCAGATGTTGAAGGACCATGACCGCCAAATTCAAGAGGCAGTTAGAAGAGCGCGTTTGGACAAGGCAAAAATGAGAAGACTCCAAGCTGAGGGGAACCAGATAACCAATTCATTATTTGTTTCTGGTCGTTGA 2124 0.4496 MGCMCCKPSAIEDSKESPRERLSSKVASDLCISRGTSSRREEVYRVKDRYDNNDGRTALIDKQGNGSVRVQGDGFERKREKTEYAVAQHPGIGSIPKAMEGEQVAAGWPSWLASVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQRKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHSCGVLHRDIKGSNLLIDNNGILKIADFGLASFYDPNQTQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVGETFKDFPAPAIELIETLLSIDPADRGTSASALNSEFFSTKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQGAAGSKGQRHDLERRGARESRAIPAPDANAELVLSMQKRQAQTNSQSRSEKFNPHPEEVASGFPIDPPRPSQAAEVSLDPQVHQHKRASHSGPLTHRAAWAKAGKNQDDAPKISMGGDLSTISGLVAARRSMLSDDRRERSGSSQGEAPKLISRFPGSFKEASESMMQQDQKHHVHAPQKEEGRSSNRDSNLVGYGSKGHKIHYSGPLLVPSSNMDQMLKDHDRQIQEAVRRARLDKAKMRRLQAEGNQITNSLFVSGR* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0399 707 SUPERFAMILY Protein kinase-like (PK-like) 125 423 IPR011009 -
Apr2g0399 707 MobiDBLite consensus disorder prediction 579 644 - -
Apr2g0399 707 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Apr2g0399 707 Pfam Protein kinase domain 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0399 707 PANTHER CELL DIVISION PROTEIN KINASE 1 689 - -
Apr2g0399 707 Coils Coil 674 694 - -
Apr2g0399 707 MobiDBLite consensus disorder prediction 434 469 - -
Apr2g0399 707 SMART serkin_6 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0399 707 MobiDBLite consensus disorder prediction 483 498 - -
Apr2g0399 707 ProSiteProfiles Protein kinase domain profile. 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0399 707 CDD STKc_CDK9_like 131 415 - -
Apr2g0399 707 MobiDBLite consensus disorder prediction 421 528 - -
Apr2g0399 707 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
Apr2g0399 707 Gene3D Transferase(Phosphotransferase) domain 1 214 454 - -
Apr2g0399 707 MobiDBLite consensus disorder prediction 614 635 - -
Apr2g0399 707 PANTHER CYCLIN-DEPENDENT KINASE 1 689 - -
Apr2g0399 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0399 Apr-Chr2 4662886 4670353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0399 123 472 Core Cell Cycle Gene Families AT5G10270 52.459 6.41e-121 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Apr2g0399 Pkinase 3.7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0399 - - gmx:100792173 1356.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0399 2 4662886 4670353 Apr2g0399 2 4662886 4670353 ECH