Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0389 ATGGCTGAGTTCACAGAATTGTTTCCCTTAGGCCAAAAATTGGATGGTTTGATGCATATGTATGTGTACATAGTCACTTTTGACCTTCAAACTGTGGTCATTGTTGGTATCATAGTCACATTGTTCTTCTTCATCTTCTACCAAATTCTAAATGGTTTATTTTATTGGTTAATGGAAAGGAGACCAAATGAACATGATCTTGAAGAAGGAAACACTCATCTAGCTTATGGGGCCTCTGACCCATCTCACCAAGTTACCATTTTCCATGCTCTTGTACATAGCAACTTGCAAGCTTGGACATTGGTGACTGCATTTGAAGGAATGTTTGATGAGAAGCGAGGACAGATGCTTAGAACTTTCAAGAAATTGCCTCCTTTGGTGAACTATGGAAGACATCATATGATAAGAAATTGTGGTGAATGTGCCATTTGCTTAGAAGACTTTCAAGTTGGTCAGTGTTGTCAAGTTTTTCCTGTGTGCAACCACTTTTTTCATTCAGATTGCATAGACCATTGGTTGCAGAAGAAATTAACATGTCCAATATGTCGTAGTCGTATATAG 561 0.3815 MAEFTELFPLGQKLDGLMHMYVYIVTFDLQTVVIVGIIVTLFFFIFYQILNGLFYWLMERRPNEHDLEEGNTHLAYGASDPSHQVTIFHALVHSNLQAWTLVTAFEGMFDEKRGQMLRTFKKLPPLVNYGRHHMIRNCGECAICLEDFQVGQCCQVFPVCNHFFHSDCIDHWLQKKLTCPICRSRI* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0389 186 CDD mRING-H2-C3H2C2D_ZSWM2 140 183 - -
Apr2g0389 186 SUPERFAMILY RING/U-box 140 186 - -
Apr2g0389 186 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 16 185 - -
Apr2g0389 186 SMART ring_2 141 182 IPR001841 -
Apr2g0389 186 PANTHER RING FINGER DOMAIN-CONTAINING 16 185 - -
Apr2g0389 186 Pfam Ring finger domain 140 183 IPR001841 -
Apr2g0389 186 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Apr2g0389 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 186 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0389 Apr-Chr2 4597794 4598354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0389 29 184 C3H Transcription Factor Family AT1G53010 29.268 1.08e-15 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0389 - - gmx:102660073 310.071