Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0370 ATGAGCAAAGCCCTCGGAGAAGACGAAGAAGACGAAGAACGAGATTGCTTCTACGACTCTCACGACCGTTTGCTCTCTCTCTCTTCCTCGTGTTCATGTTCATGTTCCAACTCTGACGAAGAAGAACAACAAAATTACAATCACAATCACAATCACAATCACAATTTCGCCCTCAACAACTACGACATATGGATCTCCCAACCCTCCTCCGTCTCCGAACGCCGCACGCGCCTCTTTCAAACTATGGGACTTTCCGATCACTCCTCCATCGTCCGATCCAAATCAGACGCTGCTTCTTCTTCCTCTCGCCACCAAAATTCCACTCCGCTTGTAAATAACCCCAATCTCTCCGCCGGAGATTCTCCCAGTAAGCCACCCTCCGGGAAGAATTGCCGGAGAAGCGACTCGTCCGTCGATTTTGGGGTTTCCGAGGAGGAAGAGAAGGTCTGTACGATAAGGGATCTTGATAACGGGAAGGAGTTTGTGGTGAAGGAAGTGAGGGAGGATGGGATGTGGGATAAGCTAAGGGAGGTTGGAACTGGGAGGCAATTGACTATGGAGGAGTTTGAAATGACGGTGGGCCATTCTCCGATCGTGCAGGAGTTAATGCGCCGTCAGAGTGTGGAGGAAGACAATGTTGATGCCAATGTCAGTGGAGGGAGTGGTGGTGGTGGAGGTGGTGGTGGTAATGGCAATGGCGGTTCTAAGGTGAAGAAGAAAGGAGGGGGGTGGTTGAAGAGTATCAAGAGCGTGGCGAGTTCGATGGCGATGGCGGGGCATAAGGAGCGGCGGAGTAGCGATGAGAGGGACACGTCGTCGGAGAAGGGAGGGAGGAGGTCGAGTTCCGCCACGGATGATAGCCAGGATGCTTCTTTTCATGGACCTGAGAGAGTGAGAGTTAGGCAGTATGGGAAGTCTTGTAAGGAGCTAACTGCATTGTATAAGAGCCAGGAGATTCAGGCTCATAGTGGATCCATTTGGAGCATTAAGTTTAGTTTGGATGGCAAGTACCTTGCCAGTGCTGGTGAGGATTGTGTCATTCATGTGTGGCAGGTTGTGGAGTCTGAGAGGAAAGGGGAGTTGCTGCTCATGGAGAAGCCTGAGGATGTTAATGTTAATATGTTGTTGGTGGTGAATGGATCGCCCGAACCAACATTGCTGTCTCCTCTTGTGGATAACCATCCCGAGAGGAAGAGGAAGGGGAGGTCCTCCATTAGTAGAAAGTCCTTGAGCTTGGACCAGTTTGTGGTTCCCGATACTGTGTTTGCGCTCACTGAGAAGCCTGTTTGCTCCTTTCAAGGCCATCTCCACGATGTACTTGACCTTTCCTGGTCCAAGTCTCAGCACTTGCTCTCATCTTCAATGGACAAAACAGTGCGGCTGTGGCATTTGTCTAGCAAGTCTTGTTTGAAAATTTTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAATTACTTCATTAGCGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGACTGATCTGCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGTGCACTTGTTGGTTCATACAAGGGTAGCTGCCATTTATACAATACATCTGAAAATAAGTTGCAACAGAAGAGTCAGATCAATCTGCAGAACAAGAAAAAGAAATCACATCACAAGAAAATTACTGGTTTCCAGTTTGCCCCTGGAAGTTCATCAGAAGTACTTATTTCATCTGCTGATTCACGAATTCGGGTTGTTGATGGCGTTGATCTGGTTCATAAGTTTAAAGGCTTTCGAAATGCCACTAGCCCCATTTCAGCTTCCCTCACGGCAAATGGTAAATACGTTGTTGCAGCAAGCGAGGATTCCCATGTATACATTTGGAAAAATGAAGCTGATTGCAGGCCTAACAGAAGTAAAGGTGTCACTGTCACCCGCTCATATGAACATTTTCACTGTAAAGATGTGTCGGTGGCCATTCCCTGGCCTGGTATGGGTGATGCATGGGACATGCATGGTACATTTTCTGGAGAACAACCTGAGCTTGATAATAATGCAGATGAAGTTTTGTCAGCCAATCACCCTCCTACCCCTGTAGAGGAAAACTTTGGTACCGAGGGTTCAAGATCTGCATCAGGTTACAACAATAGTCCACGTCATGCAACCATTGCAAGTGCCACCAATAGTTACTTTTTTGATAGAATTTCTGCAACATGGCCTGAGGAAAAACTTCTTTTAGCTGCAAGAAACCAAAGCCCTCGGGTTAGTGTGGATTTCTCTAATGGGATAAGTCAAAAAATGTCAGCCTGGGGTATGGTGATTGTAACTGCCGGCCTCCGAGGGGAAATTAGAACTTTCCAAAATTTTGGATTTCCACTTCGGATATAA 2421 0.4713 MSKALGEDEEDEERDCFYDSHDRLLSLSSSCSCSCSNSDEEEQQNYNHNHNHNHNFALNNYDIWISQPSSVSERRTRLFQTMGLSDHSSIVRSKSDAASSSSRHQNSTPLVNNPNLSAGDSPSKPPSGKNCRRSDSSVDFGVSEEEEKVCTIRDLDNGKEFVVKEVREDGMWDKLREVGTGRQLTMEEFEMTVGHSPIVQELMRRQSVEEDNVDANVSGGSGGGGGGGGNGNGGSKVKKKGGGWLKSIKSVASSMAMAGHKERRSSDERDTSSEKGGRRSSSATDDSQDASFHGPERVRVRQYGKSCKELTALYKSQEIQAHSGSIWSIKFSLDGKYLASAGEDCVIHVWQVVESERKGELLLMEKPEDVNVNMLLVVNGSPEPTLLSPLVDNHPERKRKGRSSISRKSLSLDQFVVPDTVFALTEKPVCSFQGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDNYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHHKKITGFQFAPGSSSEVLISSADSRIRVVDGVDLVHKFKGFRNATSPISASLTANGKYVVAASEDSHVYIWKNEADCRPNRSKGVTVTRSYEHFHCKDVSVAIPWPGMGDAWDMHGTFSGEQPELDNNADEVLSANHPPTPVEENFGTEGSRSASGYNNSPRHATIASATNSYFFDRISATWPEEKLLLAARNQSPRVSVDFSNGISQKMSAWGMVIVTAGLRGEIRTFQNFGFPLRI* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0370 806 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 135 806 - -
Apr2g0370 806 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 1 102 - -
Apr2g0370 806 ProSiteProfiles Trp-Asp (WD) repeats profile. 472 506 IPR001680 GO:0005515
Apr2g0370 806 ProSiteProfiles Trp-Asp (WD) repeats profile. 432 472 IPR001680 GO:0005515
Apr2g0370 806 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 360 IPR001680 GO:0005515
Apr2g0370 806 MobiDBLite consensus disorder prediction 213 241 - -
Apr2g0370 806 Gene3D - 305 664 IPR015943 GO:0005515
Apr2g0370 806 SMART WD40_4 508 546 IPR001680 GO:0005515
Apr2g0370 806 SMART WD40_4 312 351 IPR001680 GO:0005515
Apr2g0370 806 SMART WD40_4 599 640 IPR001680 GO:0005515
Apr2g0370 806 SMART WD40_4 425 463 IPR001680 GO:0005515
Apr2g0370 806 SMART WD40_4 466 505 IPR001680 GO:0005515
Apr2g0370 806 SMART WD40_4 553 598 IPR001680 GO:0005515
Apr2g0370 806 PANTHER WD REPEAT DOMAIN 44 1 102 IPR040324 -
Apr2g0370 806 PANTHER WD REPEAT DOMAIN 44 135 806 IPR040324 -
Apr2g0370 806 SUPERFAMILY WD40 repeat-like 315 642 IPR036322 GO:0005515
Apr2g0370 806 PRINTS G protein beta WD-40 repeat signature 338 352 IPR020472 -
Apr2g0370 806 PRINTS G protein beta WD-40 repeat signature 450 464 IPR020472 -
Apr2g0370 806 PRINTS G protein beta WD-40 repeat signature 492 506 IPR020472 -
Apr2g0370 806 MobiDBLite consensus disorder prediction 260 282 - -
Apr2g0370 806 Pfam WD domain, G-beta repeat 318 350 IPR001680 GO:0005515
Apr2g0370 806 Pfam WD domain, G-beta repeat 603 640 IPR001680 GO:0005515
Apr2g0370 806 Pfam WD domain, G-beta repeat 468 505 IPR001680 GO:0005515
Apr2g0370 806 Pfam WD domain, G-beta repeat 427 462 IPR001680 GO:0005515
Apr2g0370 806 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 432 466 - -
Apr2g0370 806 MobiDBLite consensus disorder prediction 85 137 - -
Apr2g0370 806 MobiDBLite consensus disorder prediction 255 298 - -
Apr2g0370 806 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 352 - -
Apr2g0370 806 MobiDBLite consensus disorder prediction 85 145 - -
Apr2g0370 806 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 472 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0370 Apr-Chr2 4456587 4462576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0370 419 637 U-box Gene Family AT1G04510 27.386 4.63e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0370 K20241 - gmx:100815065 1158.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0370 2 4456587 4462576 Apr2g0370 2 4456587 4462576 ECH