Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0346 ATGGCCACCACCCACACTGTTCCTCTCCAACACCACTCACGCATGCACTACCCCTCCACTGATGAAGAAGACCAAGACGACGACGACGAAGACACCGACCTCGAAGACCACAACAATGTTACCATCGACAACCAAATACCAGAACTCAAAAGCGGGTTTTCGGGTCGGGTATTGGTGGAGCCGAGAGCCAAATGGGTTGAAGAATGGAACAGGGTGTTCCTGCTAGTGTGCGCGACGGGGTTGTTCGTGGACCCCTTATTCTTCTACGCTCTCTCTATAAGCGACACGTGTATGTGCCTCTTCGTTGACGGGTGGCTGGTGATCACCGTGACGGTGCTCCGCTGCATGACGGACGCGTTGCACATTTGGAACATGTGGTTGCAGTTGAAGATGGCCAAGCGTTCTTCCATTCCCATACGAGACACCACCAAACTCATCGCCAACCGGCTCTTCTTCTTTGACCTCTTTGTCATTCTCCCTATTCCCCAGATTGTGCTATGGATAGCAATTCCGTCTCTGTTGGAGAAAGGATCAATTACGTTGGTGATGACAGTTTTCTTAATCATGTTCCTCTTTCAATACCTTCCCAAAATTTATCACTCAGTTTGTCTCTTGCGTCGCATTCAAAACCTCTCTGGCTACATTTTTGGGACCGTTTGGTGGAGTATCGCCCTCAACATGATCGCGTATTTTGTAGCTTCCCATGCAGCAGGAGCATGTTGGTATTTGCTGGGGATCCAGAGGGCAGCCAAGTGTCTCCAAGAGCAATGTGCAAAAACAAGTGGTTGTGGCTTGAGAACACTGTGTTGTAAAGAACCTATATACTATGGAAGCACAAGCATTGTGAGAGAGAAATCCAGTACTTTTGGGAACCTAGAGAGCACAACGGAACGGATTGAAGTGGTTTTCAACATTATTGTATTGACTAGTGGCCTCATTCTAGTCACGATGCTGATTGGAAACATCAAGGTATTTTTGCATGCCACAACATCAAAGAAGCAAGCAATGCAATTGAAGATGAGGAACATTGAATGGTGGATGAGTAAAAGGCGCTTGCCACATGGGTTTCGGCAACGTGTGCGTAACTACGAGCGGCAACGTTGGGCTGCTATGCGTGGGGTTGATGAATGCCAAATGATAAAAAATCTCCCAGAGGGTCTAAGAAGGGACATCAAGTACCATCTTTGTTTGGATTTAGTGAGACAGGTGCCACTATTTCAGCACATGGATGATTTGGTGCTAGAGAACATTTGTGACCGTGTGAAGTCCCTTGTATTCACAAAGGGAGAAACAATAACTAGAGAGGGAGACCCAGTTCAAAGAATGTTATTTGTGGTGAGGGGTCACCTTCAGAGCAGCCAAGTCCTACGAGATGGGGTGAAAAGTTGCTGCATGTTAGGCCCAGGGAACTTCAGTGGGGATGAGCTACTTTCATGGTGTCTAAGGAGGCCCTTTATAGAGCGTCTTCCACCATCATCATGCACTTTGGTCACACTTGAAACCACTGAGGCATTTGGGCTTGAAGCTAAGGATGTGAAGTATGTGACACAACATTTTAGGTACACATTTGTAAAGGAAAAGGTTAAGAGAAGCGCTAGGTATTACTCACCTGGCTGGAGAACTTGGGCTGCTGTGGCCATTCAGTTGGCTTGGAGAAGGTATAAGCATCGTTTGAATTTGAATTCTTTGTCCTTTATAAGGCCTCGAAGGCCTGCTTCAAGGTGCACTTCCATGGAAGAGGATAGGCTTCGTCTCTATACGGCTTTGTTAACCTCACCAAAGCCTAATCAGGATGACTTTGACTTTTGA 1809 0.4688 MATTHTVPLQHHSRMHYPSTDEEDQDDDDEDTDLEDHNNVTIDNQIPELKSGFSGRVLVEPRAKWVEEWNRVFLLVCATGLFVDPLFFYALSISDTCMCLFVDGWLVITVTVLRCMTDALHIWNMWLQLKMAKRSSIPIRDTTKLIANRLFFFDLFVILPIPQIVLWIAIPSLLEKGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRIQNLSGYIFGTVWWSIALNMIAYFVASHAAGACWYLLGIQRAAKCLQEQCAKTSGCGLRTLCCKEPIYYGSTSIVREKSSTFGNLESTTERIEVVFNIIVLTSGLILVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMSKRRLPHGFRQRVRNYERQRWAAMRGVDECQMIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLVFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSCTLVTLETTEAFGLEAKDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLNLNSLSFIRPRRPASRCTSMEEDRLRLYTALLTSPKPNQDDFDF* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0346 602 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 287 599 - -
Apr2g0346 602 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 3 281 - -
Apr2g0346 602 CDD CAP_ED 405 511 IPR000595 -
Apr2g0346 602 SMART cnmp_10 405 534 IPR000595 -
Apr2g0346 602 Gene3D Jelly Rolls 403 521 IPR014710 -
Apr2g0346 602 Pfam Cyclic nucleotide-binding domain 425 513 IPR000595 -
Apr2g0346 602 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 3 281 - -
Apr2g0346 602 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 287 599 - -
Apr2g0346 602 ProSiteProfiles cAMP/cGMP binding motif profile. 405 484 IPR000595 -
Apr2g0346 602 SUPERFAMILY Voltage-gated potassium channels 67 326 - -
Apr2g0346 602 MobiDBLite consensus disorder prediction 22 36 - -
Apr2g0346 602 Gene3D Helix hairpin bin 330 396 - -
Apr2g0346 602 MobiDBLite consensus disorder prediction 1 39 - -
Apr2g0346 602 SUPERFAMILY cAMP-binding domain-like 331 519 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0346 Apr-Chr2 4115188 4123131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0346 55 601 Ion Channels AT5G54250 72.123 0.0 895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0346 K05391 - gmx:100800795 984.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0346 2 4115188 4123131 Apr2g0346 2 4115188 4123131 ECH