Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0340 ATGACCAAGCCTTCTTCTAACGAAAAGAATGGACTGAAGAAAGGTCCATGGACGCCGGAGGAAGATCAGAAACTCACCGATTACATTCAGAAACATGGACATGGGAAATGGCGAACCCTTCCCAAAAATGCAGGACTAAAAAGATGTGGCAAGAGTTGCCGGCTTCGCTGGGCTAACTACTTGAGGCCTGATATAAAGAGGGGGAGATTCTCATTGGAAGAAGAAGAAGCCATCATCCAGTTACACAGTGTTTTGGGAAACAAGTGGTCTACAATTGCTGCTAACTTGCCAGGAAGAACAGACAATGAGATCAAGAATTATTGGAATACCCACATCAAGAAAAAGCTATTGAAGATGGGGATTGATCCAGTGACTCACACACCGCGCCTTGATGTGATACAATTAGCTTCCATTCTGAACTCATCTTTATACAATTCACCCCAATTTAACCACCCTGGCCTTTCAGGGATGGGAAGAGACGTAAATCCAAGCCAGCTACTAAGTTTACTCACCACTCTGCTATCATGTCAAAGCAAAAACCAAGATGTTTTAAATCATAATTACCAGCAAAATAACCAAATTGGTGGCACCCCTTTATTGCAAAATCAATCCCAATGCTCCCAACCAATACAACTTGGTTCTATCCAAACCTTCCAACCAAACCAACCCCAAGTCTCAATTCAAGAAAACCATTGTACTAAGTCTAATCCATTGCATATAGAAACAAAACTAGAGCAACAAATCTCTCCAATTACAATTCCTTTTAGCCAACAAATTAACGCTCTACCAAACTTGTGGCAGTATAATGGAGGTCATAATCACATATCAGATCAAAATCAAGCCGAATCATCAGGAACACAATGTTTCTCTTCTCCCAAGTACAACTCCATCATCAACAATCTCTTGGAAAATCAGATTTTATGTAACAATGAGGGGGTGCCAAATTTCAATTTAAGCTCACTGTTATCATCCACACCATCGTCTTCTAGCCCGAGTACTTTGAATTCATCATCTTCCACGACATTCGTCAATGGAACCACTGAAGATGAAAGGGACACTTACGGCAGCAACATGTTGATGTATAACATCTCAAATGGCTTGAATAACTCTGGACTTTTGTAA 1122 0.4073 MTKPSSNEKNGLKKGPWTPEEDQKLTDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGRFSLEEEEAIIQLHSVLGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLLKMGIDPVTHTPRLDVIQLASILNSSLYNSPQFNHPGLSGMGRDVNPSQLLSLLTTLLSCQSKNQDVLNHNYQQNNQIGGTPLLQNQSQCSQPIQLGSIQTFQPNQPQVSIQENHCTKSNPLHIETKLEQQISPITIPFSQQINALPNLWQYNGGHNHISDQNQAESSGTQCFSSPKYNSIINNLLENQILCNNEGVPNFNLSSLLSSTPSSSSPSTLNSSSSTTFVNGTTEDERDTYGSNMLMYNISNGLNNSGLL* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0340 373 CDD SANT 69 112 IPR001005 -
Apr2g0340 373 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 362 - -
Apr2g0340 373 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr2g0340 373 CDD SANT 16 61 IPR001005 -
Apr2g0340 373 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr2g0340 373 MobiDBLite consensus disorder prediction 322 350 - -
Apr2g0340 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr2g0340 373 MobiDBLite consensus disorder prediction 1 23 - -
Apr2g0340 373 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 1 362 - -
Apr2g0340 373 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr2g0340 373 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr2g0340 373 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Apr2g0340 373 Gene3D - 69 116 - -
Apr2g0340 373 SMART sant 13 63 IPR001005 -
Apr2g0340 373 SMART sant 66 114 IPR001005 -
Apr2g0340 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr2g0340 373 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0340 Apr-Chr2 4080497 4082290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0340 1 373 MYB Transcription Factor Family AT4G21440 46.015 1.17e-93 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr2g0340 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0340 K09422 - gmx:100820398 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0340 2 4080497 4082290 Apr2g0340 2 4080497 4082290 ECH