Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0330 ATGGCGTGCTTTACAGAAAATTTTGGAAGGACAGGACCACACTCTCTACCATTGGCCAGAATCAAGAAGATCATGAAAAAATCTGGGGAAGATGTTAAAATGATATCAGGTGAGGCTCCTATTGTTTTCTCCAAGGCTTGTGAACTCTTCATTGAGGAGCTTACTGGAAGGTCTTGGATTATGGCTATAGAAGGCAAAAGGAGAACTTTGCACAAAGAAGATGTGACCTCTGCTGTTATAGCCACTGATATCTTTGACTTTTTAATCAATCTGGTTTCCAGCAGCCATACACTTGGCGCCCCCACTAATTTGGAGATGGAAACTATAGATTATTTCAATGATCATCTCAGCTAG 354 0.4096 MACFTENFGRTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTGRSWIMAIEGKRRTLHKEDVTSAVIATDIFDFLINLVSSSHTLGAPTNLEMETIDYFNDHLS* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0330 117 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 15 79 IPR003958 -
Apr2g0330 117 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 9 97 - -
Apr2g0330 117 SUPERFAMILY Histone-fold 6 88 IPR009072 GO:0046982
Apr2g0330 117 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 97 - -
Apr2g0330 117 Gene3D Histone, subunit A 4 93 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0330 Apr-Chr2 3943161 3943674 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0330 14 92 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.354 1.81e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Apr2g0330 CBFD_NFYB_HMF 2.1e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0330 - - ccaj:109817175 171.014