Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0325 ATGGAAAACAAGGCAAAGAAAGCTATGAAGAAGAATTTAACAAGGGCTATTGCTAACAAGCCATCTCAGGGTGCTGATTTCTTGCCCTTGGAAGGTGGTCCTGCTCGCAAGCTTCCCGAGCAGAAGCCGACGGAGAATACCGCAACGGTTTTGTATGTGGGTCGGATTCCACATGGGTTCTATGAGAAGGAGATGGAAGGTTACTTTGGGCAATTTGGAACCATCAAGAGATTGAGAATTGCGAGAAATAAAAAGACAGGAAACTCAAGACATTTTGGGTTCATACAATTCGAATCTCCTGAGGTAGCAAAAATTGTGGCTGATACTATGCACAATTATCTCCTCTTTGAACACCTTCTCCAGGTTTATGTGATACCCCCTGAGCATGTTCATCCAAAATTGTGGAGAGGATTCAATTACCGTTACAAGCCAGTGGACATGGTACAAATTCAAAGGGGGCAACATGACAAGGAAAGAACATTGGAAGAGCACTCGAAATTGGTGGACAATATTTTGAAACGTGACAAAAATAGACGAAAAAAGATAGAGGCTGCTGGCATTGATTATGAATGCCCTGAGATGGTGGGTAACCTCCATCCTGCTCCAAAGAAAATCAAGTTTGAAGACTAA 630 0.427 MENKAKKAMKKNLTRAIANKPSQGADFLPLEGGPARKLPEQKPTENTATVLYVGRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKTGNSRHFGFIQFESPEVAKIVADTMHNYLLFEHLLQVYVIPPEHVHPKLWRGFNYRYKPVDMVQIQRGQHDKERTLEEHSKLVDNILKRDKNRRKKIEAAGIDYECPEMVGNLHPAPKKIKFED* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0325 209 CDD RRM_NIFK_like 50 122 - -
Apr2g0325 209 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 18 208 - -
Apr2g0325 209 MobiDBLite consensus disorder prediction 1 42 - -
Apr2g0325 209 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 118 IPR000504 GO:0003723
Apr2g0325 209 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Apr2g0325 209 SMART rrm1_1 50 123 IPR000504 GO:0003723
Apr2g0325 209 Gene3D - 3 124 IPR012677 -
Apr2g0325 209 PANTHER - 18 208 - -
Apr2g0325 209 SUPERFAMILY RNA-binding domain, RBD 49 195 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0325 Apr-Chr2 3857084 3861992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0325 49 122 Eukaryotic Initiation Factors Gene Family AT1G71770 35.135 9.33e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0325 K14838 - gmx:100778780 357.451