Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0308 ATGTTGAACAATGGGAACTTTTCTTTGGTTGGTTCAGGTTCAATAATTCCATTGCAACAATCAAATGCATTTGCAAAGAAAGAAACTTCAACACCAATCAACTCAAGTAACCATGGCCTTGTTCCCAATTTGGTTGCAACAAAAGTCAACATGCCAATTTCAAATGTGACAAAAATCATGAGACAAATTCTTCCAATTAATGCAAAAATTTCAGAGAGTGCTAAGGAGATGATTCAACAATGTGTTACAAAGTACATAGCCTTTGTCACTAAAAAAGCCAAGGAACGATGCCAAAGCGATTATAGAAAAATTATGAATGTTGAGGACCTTTTATGGGCCCTAGAGGAGCTGGGCTTTGATGACTATGTTGGGCCTCTCACTGTTTTCCTCCAACGCTATCGTGAGGAGCCCATTCTTCCAAGTGTAAAGCAAAGCATTGACAATAGTGGGCCTATTACTGGGCCGGAGGCTGGTACAAAGCCCACTGTTGAAATAGTTCAACCATCCTTATCACCACCACTTGGCTCTTCTGGGCCAGACTTTTCCATGGACCCAAATTCAAAAATGGAAATTTTTGACCCAAATGACATAAATGAAGTCATTAATGGGTTCTACATGGATGGGTTTGATGTTGGTTCTTTGGACAGTGCTTTGACCAACTTTGACCCCTCCTCTTCTTTCAAACATGATTGA 693 0.4012 MLNNGNFSLVGSGSIIPLQQSNAFAKKETSTPINSSNHGLVPNLVATKVNMPISNVTKIMRQILPINAKISESAKEMIQQCVTKYIAFVTKKAKERCQSDYRKIMNVEDLLWALEELGFDDYVGPLTVFLQRYREEPILPSVKQSIDNSGPITGPEAGTKPTVEIVQPSLSPPLGSSGPDFSMDPNSKMEIFDPNDINEVINGFYMDGFDVGSLDSALTNFDPSSSFKHD* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0308 230 Gene3D Histone, subunit A 45 147 IPR009072 GO:0046982
Apr2g0308 230 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 49 141 IPR027113 GO:0001228|GO:0006355|GO:0016602
Apr2g0308 230 SUPERFAMILY Histone-fold 49 136 IPR009072 GO:0046982
Apr2g0308 230 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 49 141 - -
Apr2g0308 230 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 50 114 IPR003958 -
Apr2g0308 230 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Apr2g0308 230 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Apr2g0308 230 PRINTS CCAAT-binding transcription factor subunit A signature 116 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0308 Apr-Chr2 3692974 3693666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0308 37 161 CCAAT-HAP3 Transcription Factor Family AT1G21970 48.252 1.08e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Apr2g0308 CBFD_NFYB_HMF 2.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0308 K08065 - tcc:18593281 132.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0308 2 3692974 3693666 Apr9g1841 9 27185842 27187050 PCT