Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0297 ATGGCGGACTCTGACAACGATTCCGGCGGTGCGAATAACGCCGGCGGAGCGAATGCTCAGGGAAGCGAGATGTCGCCGCGGGAACAGGACCGGTTTCTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCTTTGCCGGCGAACGCGAAGATCTCGAAGGATGCGAAGGAGACGGTGCAGGAGTGCGTGTCAGAGTTCATAAGCTTCATCACCGGCGAAGCCTCCGACAAGTGCCAACGCGAGAAGCGCAAAACCATCAACGGCGACGATTTGCTGTGGGCGATGACCACTCTCGGCTTCGAGGACTACGTGGAGCCACTCAAGGGTTACCTCCAGCGCTTCAGGGAGATGGAAGGAGAGAAGAGCGTGGCGGCGCGTGATAAAGACGCGCCTCCTGCTCTTAATGCTAACAACAGTACTTTCGAGAGTAGTAGTTATGGTGGTGGAATCATTATGCATCAGGGACACGTGTACGGTTCTGGTGGGTTCCATCAAGTGGCTGGTGGCGCCGCTGCTATTAAGGGTGGGCCTGGTTATCCTGGGGCCGGATCTAATGCGGGTAGGCCCAGATAG 576 0.5712 MADSDNDSGGANNAGGANAQGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKGYLQRFREMEGEKSVAARDKDAPPALNANNSTFESSSYGGGIIMHQGHVYGSGGFHQVAGGAAAIKGGPGYPGAGSNAGRPR* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0297 191 MobiDBLite consensus disorder prediction 1 25 - -
Apr2g0297 191 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Apr2g0297 191 SUPERFAMILY Histone-fold 29 130 IPR009072 GO:0046982
Apr2g0297 191 MobiDBLite consensus disorder prediction 1 31 - -
Apr2g0297 191 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Apr2g0297 191 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Apr2g0297 191 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Apr2g0297 191 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Apr2g0297 191 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 153 - -
Apr2g0297 191 Gene3D Histone, subunit A 20 146 IPR009072 GO:0046982
Apr2g0297 191 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 153 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0297 Apr-Chr2 3595774 3597831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0297 1 159 CCAAT-HAP3 Transcription Factor Family AT4G14540 70.552 5.27e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Apr2g0297 CBFD_NFYB_HMF 1.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0297 K08065 - gmx:100813580 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0297 2 3595774 3597831 Apr2g0297 2 3595774 3597831 ECH