LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr2g0270	ATGGTAATGGACACCGCCGAACCCCTCTCCGGTGAGCTCCGGCGAGGAGAGTCTCAATTGGAATCCGACGATCCGAATCGACCCGTACTGACGCCCAATTCTGCCGCTGCCGGAGCTCCGGTCACCGCCGGCGCGAGGTACAAGCTGATGTCGCCCGCGAAGCTTCCGATCTCGAGGTCGCCGTGCGTCACGATTCCGCCGGGGCTTAGTCCCACGTCGTTTCTGGAGTCGCCGGTGCTGCTCTCGAACATGAAGGTTGAACCTTCACCGACTACAGGATCCCTTCCTATGCTTCATCAAATAGCACATGGCTCTGTGACTTCTGCTGCATCTGCTACTTTTCCTGTATCTACTTCATGCTTCAATACCAATACTGTTGATGACAGAAAATCCAGTTTCTTTGAGTTTAAACCACACAGTAGATCAAATATGGTTCCTGCAGACTCTGACAACCATGCAAGTGAAAAATCTATGCAAATAGATGGTCAAGGAAAAGCTCAATCTTTTGACTCATCACCATTAGTCAAAAGTGAGATAGCAGTCCCTTCAAACGAATTAAGTCTATCATCACCAGTTCAACTGGTTAGTTCAGTAGCTAGTGCTCATGTTGAAGGTGATTTGGACGAATTGAACCCTAGGAACAACATAGCATCTGGGCTTCAAGCATCACAAGTTGACAGTAGAGGCAATGGAATTTCAGTTACAGCTGAGAGAGTATCTGATGATGGATACAACTGGCGAAAATATGGACAAAAACATGTTAAAGGAAGTGAATTTCCACGCAGTTATTATAAATGTACACATCCTAATTGTGAAGTGAAGAAATTATTTGAACGCTCTCATGATGGACAAATCACTGAGATAATTTACAAGGGAACACACGATCATCCTAAACCTCAACCTAACCGCCGATACTCTGCTGGAACTATTATGTCTATGCAAGAAGAGAGATCTGATAAGGCTTCTTTGACTAGCCGAGATGACAAAGGATCCAATATATTTGGCCAGATATCTCACACAGCTGAGCCTGACAGAACTCTAGAGCTATCACCTGTAGCAACAAATGATGATAATCTAGAGGGTACAGGGTTTTTGTCAAGCCGGAATAATGATGAGATTGATGATGATGATCCCTTCTCAAAACGAAGAAAAATGGATCTTGGAAATGCTGACATCATTCCTGTAGTTAAACCTATCCGGGAGCCACGTGTTGTTGTACAAACTCTGAGTGAGGTTGATATATTAGATGATGGTTACCGCTGGCGAAAGTATGGGCAGAAGGTTGTGAGAGGCAATCCTAACCCTAGGAGTTATTACAAATGCACTAACACTGGTTGCCCAGTTCGAAAGCATGTGGAGAGGGCATCTCATGATCCAAAAGCTGTGATAACCACATACGAGGGTAAACACAATCATGATGTACCAACTGCAAGGAATAGCTGTCATGACATGGCAGGACCAGCAACTGCAGGTGGACAGACAAGAATTAGGCCAGATGAGAGTGATACCATTAGCCTTGACCTCGGGATGGGCATTAGCCCAGCTGCTGAAAACACGTCAAACAGTCAAGGTAGAATGATGCTTTCTGAATTTGGAGACAGTCAAACTCGCACCATCAATTCCAATTTTAAGTTTGTTCATTCTACTACGGCTCCAGCATACTTTGGTGTTATAAGTAACAACTCGTATGGTTCTAGAGAAAATCCCACTGATAGTCCATCTTTAAACCATTCTGCTTATCCTTGCCCTCAGAACATGGGAAGAATACTAATGGGTCCTTAA	1782	0.4456	MVMDTAEPLSGELRRGESQLESDDPNRPVLTPNSAAAGAPVTAGARYKLMSPAKLPISRSPCVTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPMLHQIAHGSVTSAASATFPVSTSCFNTNTVDDRKSSFFEFKPHSRSNMVPADSDNHASEKSMQIDGQGKAQSFDSSPLVKSEIAVPSNELSLSSPVQLVSSVASAHVEGDLDELNPRNNIASGLQASQVDSRGNGISVTAERVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSAGTIMSMQEERSDKASLTSRDDKGSNIFGQISHTAEPDRTLELSPVATNDDNLEGTGFLSSRNNDEIDDDDPFSKRRKMDLGNADIIPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNSCHDMAGPATAGGQTRIRPDESDTISLDLGMGISPAAENTSNSQGRMMLSEFGDSQTRTINSNFKFVHSTTAPAYFGVISNNSYGSRENPTDSPSLNHSAYPCPQNMGRILMGP*	594

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr2g0270	593	MobiDBLite	consensus disorder prediction	352	382	-	-
	Apr2g0270	593	ProSiteProfiles	WRKY domain profile.	410	475	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Apr2g0270	593	ProSiteProfiles	WRKY domain profile.	235	299	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Apr2g0270	593	MobiDBLite	consensus disorder prediction	1	37	-	-
	Apr2g0270	593	Gene3D	WRKY domain	400	476	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Apr2g0270	593	Gene3D	WRKY domain	232	300	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Apr2g0270	593	SUPERFAMILY	WRKY DNA-binding domain	237	299	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Apr2g0270	593	Pfam	WRKY DNA -binding domain	416	472	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Apr2g0270	593	Pfam	WRKY DNA -binding domain	241	297	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Apr2g0270	593	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	31	565	IPR044810	GO:0003700
	Apr2g0270	593	MobiDBLite	consensus disorder prediction	144	171	-	-
	Apr2g0270	593	MobiDBLite	consensus disorder prediction	314	336	-	-
	Apr2g0270	593	SUPERFAMILY	WRKY DNA-binding domain	407	475	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Apr2g0270	593	SMART	WRKY_cls	240	298	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Apr2g0270	593	SMART	WRKY_cls	415	474	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Apr2g0270	593	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	31	565	-	-
	Apr2g0270	593	MobiDBLite	consensus disorder prediction	352	368	-	-
	Apr2g0270	593	MobiDBLite	consensus disorder prediction	142	171	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr2g0270	Apr-Chr2	3280013	3286858	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr2g0270	50	593	WRKY Transcription Factor Family	AT4G26640	55.957	0.0	533

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Apr2g0270		WRKY	1.8e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr2g0270	-		-	gmx:100781491	1008.44

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr2g0270	2	3280013	3286858	Apr2g0270	2	3280013	3286858	ECH
	Apr2g0270	2	3280013	3286858	Apr9g1814	9	27013356	27019286	PCT