Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0267 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATATCTTGGGACACTGATGAGGAACGTCTGAAGGAATATTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGGGATCGCGCCACGGGTCGTGCTCGTGGCTTCGGTTTCGTTGTCTTTGCCGATCCTGCTGTTGCAGAAAGAGTCATTATGGATAAACACATAATAGATGGCCGCACAGTGGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGCACAATATAAATAGACAGTCTGGTAGTGCACATGCATCTCCTGGTCCTGGACGCACGAAAAAGATTTTTGTTGGAGGGTTACCGTCAACTATCACTGAAAGTGATTTTAAAAAGTATTTTGATCAATTTGGAACAATTACTGATGTTGTAGTTATGTATGATCATAATACGCAGAGGCCAAGAGGATTTGGCTTCATCACATATGATTCTGAAGAAGCCGTGGATAGAGTTCTTTGTAGAACTTTTCATGAACTCAACGGAAAGATGGTTGAAGTCAAGAGGGCAGTTCCTAAAGAGCTTTCTCCTGGTCCCACTCGGAGCCCTTTGATAGGATATAACTATGGGGGTTTGAATAGAGCCAGTAGCTACCTAAACAGTTATGCTCAGGGCTATAGTATGAATCCAATAGGAGGATATGGAGTCAGAATGGACGGTAGGTTTAGTCCTCTTACTAGTGGTAGAAGTGGGTTTACTCCTCTTGGCAACACCGGTTATGGAATGGGGATGAATTTGGATTCAGGATTGAGCCCAAGCTTTGGAGGGACTTCCAGTTATGGAAGCAATTTAGGATATGGTCGAATACTTAGTCCTTTCTACAGTGGTAATTCTAGCAGATATACCACTCCTATAGGCTATAGTGGCGGTAGTGGGAGAAGTGATTCTCTTATGAGCTCACCCTCTCGGAATGTATGGGGAAATGGGGGCCTCAACAATGCTAGTACACCTGTCAGCCCCAGTCCTTTCTTAGGATCTGGAAGTGGGTCTTTTGGTGTTTCAATTGGAAATAGTGGCACTGGTTGGGGTCCATCCGTTCCAACCCAGGGTGGAGGGGCTGCTTCTGGCTATGCTGCTGGGAATAATGTTTATGAAGGTGGCGATAGCAGCTTTGGATTAGGTGGGGGAGGGTATGGAAGAAACAGCAGTGCTGGAGTAACTCCATCCTCTGCATTTAATGTATCATCTGGTGGTTATGAAGGATCCTATGGGGACTTATACCGCAGTGGCAGTGGTTCAGTTTACAATGACTCTACTTGGCGATCCGCTGCTTCTGAGATAGATGGTTCTGGCTCATTTGGTTATGGTCTTGGTGGTATTGCTTCAGATGACCCAGTAAAGAGTTCTGAGGGTTATATTGGAAGCTACAATGTTACAAGTAGGCAATCTAATAGAGGAATCGCTGCCTAG 1443 0.4525 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQHNINRQSGSAHASPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLCRTFHELNGKMVEVKRAVPKELSPGPTRSPLIGYNYGGLNRASSYLNSYAQGYSMNPIGGYGVRMDGRFSPLTSGRSGFTPLGNTGYGMGMNLDSGLSPSFGGTSSYGSNLGYGRILSPFYSGNSSRYTTPIGYSGGSGRSDSLMSSPSRNVWGNGGLNNASTPVSPSPFLGSGSGSFGVSIGNSGTGWGPSVPTQGGGAASGYAAGNNVYEGGDSSFGLGGGGYGRNSSAGVTPSSAFNVSSGGYEGSYGDLYRSGSGSVYNDSTWRSAASEIDGSGSFGYGLGGIASDDPVKSSEGYIGSYNVTSRQSNRGIAA* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0267 480 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 480 - -
Apr2g0267 480 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Apr2g0267 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Apr2g0267 480 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Apr2g0267 480 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Apr2g0267 480 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 480 - -
Apr2g0267 480 SMART rrm1_1 107 179 IPR000504 GO:0003723
Apr2g0267 480 SMART rrm1_1 7 78 IPR000504 GO:0003723
Apr2g0267 480 Gene3D - 6 88 IPR012677 -
Apr2g0267 480 Gene3D - 103 189 IPR012677 -
Apr2g0267 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 164 IPR000504 GO:0003723
Apr2g0267 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Apr2g0267 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Apr2g0267 480 MobiDBLite consensus disorder prediction 80 105 - -
Apr2g0267 480 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0267 Apr-Chr2 3245252 3249270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0267 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 23.596 1.12e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0267 K14411 - gmx:100805131 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0267 2 3245252 3249270 Apr2g0267 2 3245252 3249270 ECH
Apr2g0267 2 3245252 3249270 Apr9g1810 9 26986937 26991126 PCT