Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0255 ATGGGTATCTCTCGTGATTCCATGCACAAGAGGCGCGCCACTGGTGGCAAGAAGAAAGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGGAGGCAACCGGCGAACACGAAGTTATCAAGCAACAAAACTGTTAGGAGGATTAGGGTTCGAGGTGGGAATGTGAAGTGGCGTGCATTGAGGCTTGATACTGGGAACTACTCTTGGGGGAGTGAAGCTGTGACTCGCAAAACAAGGATTCTTGATGTGGTGTATAATGCGTCCAACAATGAGTTGGTTCGTACTCAGACATTGGTCAAGAGTGCCATTGTTCAGGTTGATGCAGCACCTTTTAAGCAATGGTATCTTCAACATTACGGGGTCGACCTCGGGCGCAAGAAGAAGAGTGCAACTTCTGCCAAGAAGGAAGGGGAGGATGTTGAAGGTGCAACTGAGGAGATGAAGAAGAGTAACCATGTTTTGAGAAAATTGGAAAAGCGGAAGCAGAACCGGGTGCTTGATCCTCACATTGAAGAGCAATTTGGAGGTGGTTGCCTTTTGGCTTGTATATCATCCCGACCTGGCCAATGCGGTCGTGCTGATGGGTACATATTGGAGGGCAAAGAGCTAGAATTTTACATGAAGAAGATTCAGAGGAAGAAGGGCAAGGGTGGTGGTGGTGCTTAA 663 0.4796 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDLGRKKKSATSAKKEGEDVEGATEEMKKSNHVLRKLEKRKQNRVLDPHIEEQFGGGCLLACISSRPGQCGRADGYILEGKELEFYMKKIQRKKGKGGGGA* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0255 220 MobiDBLite consensus disorder prediction 1 41 - -
Apr2g0255 220 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Apr2g0255 220 MobiDBLite consensus disorder prediction 11 26 - -
Apr2g0255 220 MobiDBLite consensus disorder prediction 125 152 - -
Apr2g0255 220 Gene3D - 27 213 - -
Apr2g0255 220 Gene3D Ribosomal protein S8e, subdomain 109 176 IPR042563 -
Apr2g0255 220 CDD Ribosomal_S8e_like 5 197 - -
Apr2g0255 220 Pfam Ribosomal protein S8e 5 197 IPR022309 -
Apr2g0255 220 PANTHER 40S RIBOSOMAL PROTEIN S8 1 216 IPR001047 GO:0003735|GO:0005840|GO:0006412
Apr2g0255 220 TIGRFAM eS8: ribosomal protein eS8 1 199 IPR001047 GO:0003735|GO:0005840|GO:0006412
Apr2g0255 220 PANTHER 40S RIBOSOMAL PROTEIN S8 1 216 - -
Apr2g0255 220 Coils Coil 139 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0255 Apr-Chr2 3130155 3132976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0255 1 220 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 83.182 9.04e-125 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0255 K02995 - gmx:100527325 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0255 2 3130155 3132976 Apr2g0255 2 3130155 3132976 ECH