Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0252 ATGCCAGAGACAAGAGGTTGCATTCATTTGAAAGAGCCTTGTCTTGTAGCCAGGAAATTCTTGGCAAGACCTCAGCATGAGGGCGTTGGAGCTGTGGTTAGAAGAAGCATAGGAAGGTTTGAGCTTAAATACTTTGATCCCTTCCTTGTGTTGGATGAATTCTCAGTTACTGCTCCTGCTGGTTTTCCTGATCATCCCCATAGAGGCTTTGAGACAGTCACATACATGTTGGAGGGAGCTATAAGGCATGAAGATTTTGAAGGACACAAAGGGACAATAGAAGCTGGTGACTTGCAATGGATGACCGCAGGGAGAGGGATAGTTCACTCAGAAATGCCTGTGGGTCAAGGAACCCAAAAGGGTCTCCAGCTGTGGATCAACTTGGCTTCCAAGGATAAAATGATTGAACCAAGGTATCAAGAAGTGTTGAGTAAGGACATAGCTGAAGGTGTGGAAGATGGTATGAAGGTTAGGGTTATAGCTGGGGAAGCACTAGGGATAAAGTCTCCAATCTACACAAGGACCCCAACTATGTTCTTGGACTTCTCTCTCAAACCAGGAGCCCACTTACAACAACCTATACCAAAATCTTGGAATGCTTTTATCTATGTCTTGGAAGGAGAGGGTGTGTTTGGAAACCTGAAATCTCAACCTACAAACTCTCATCATATTCTTCTTCTTGGTCCAGGAGATGGCCTAGAGGCATGGAACAAATCTTCTAAGCAACTTAGGTTCATTTTGGTTGGAGCAGAACCCTTGGGGGAACCTCTAGTGCAATTTGGACCCTTTGTGATGAATACTCAAGAAGAGATTGACCAAACCATTGATGATTTTGAGAATTTTGCTAATGGATTTGAGAAAGCAAAACAATGGAGAACTGAAAGCTCAGTTAATCTTGATTTTTGA 906 0.4327 MPETRGCIHLKEPCLVARKFLARPQHEGVGAVVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLEGAIRHEDFEGHKGTIEAGDLQWMTAGRGIVHSEMPVGQGTQKGLQLWINLASKDKMIEPRYQEVLSKDIAEGVEDGMKVRVIAGEALGIKSPIYTRTPTMFLDFSLKPGAHLQQPIPKSWNAFIYVLEGEGVFGNLKSQPTNSHHILLLGPGDGLEAWNKSSKQLRFILVGAEPLGEPLVQFGPFVMNTQEEIDQTIDDFENFANGFEKAKQWRTESSVNLDF* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0252 301 CDD cupin_pirin_N 31 128 - -
Apr2g0252 301 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
Apr2g0252 301 Gene3D Jelly Rolls 27 279 IPR014710 -
Apr2g0252 301 PIRSF Pirin 12 292 IPR012093 -
Apr2g0252 301 PANTHER OS09G0484800 PROTEIN 5 298 - -
Apr2g0252 301 SUPERFAMILY RmlC-like cupins 16 293 IPR011051 -
Apr2g0252 301 CDD cupin_pirin_C 176 252 - -
Apr2g0252 301 Pfam Pirin 33 126 IPR003829 -
Apr2g0252 301 PANTHER PIRIN-RELATED 5 298 IPR012093 -
Apr2g0252 301 Gene3D Jelly Rolls 148 253 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0252 Apr-Chr2 3111722 3114702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0252 13 289 Calmodulin-binding Proteins AT3G59220 59.498 3.73e-124 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0252 K06911 - gmx:100802484 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0252 2 3111722 3114702 Apr2g0252 2 3111722 3114702 ECH
Apr2g0252 2 3111722 3114702 Apr9g1802 9 26936500 26939753 PCT