Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0216 ATGATGGCAATGGGTAGCGAAGAAGAGAGGGTTCTGGAGAACCAACTCGAACTTCAATTGCAAGAGCAAAGGGATTCCCTTTCTGCCATCGATCAAGCACTCCTCTCTGATCCAACCAACCCTGAGCTTCTCGCGGTTCACGAGGAGCTTGTTCAGGCAATTAGGGATGCAGAAGAAGGACTCCTTCACCTAAAACGTGCACGATTGTTACAGGAAGCAGATTCAGCGCTGCATAGCACTAATATTTTCACTGAAGAAGAGAAAGTGGAGCCCCTGGATCCAACAGATGTTGAACCAGAGCCACTGGAGGAAAAATGTTATTCTGTTGGATCTAAATGTAGATTCCGTCACAAAGATGGGCGTTGGTACAATGGTCAAGTGGTGCAGTTGGATAATTCAGTGGCAAAAGTTTCGTTCCTTACTCCTACATCTGAGAATATGCTGATGTGCAAGTTCTTTTTGCAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGGAGTTGATGTTCAATTGTCCTCTCTTAAGAAATATGTCCCTACTCTGTGGAAACCATCTCTTGTGGGATCAAGTATATGGGCAGTCTCAAATGCAAATGCAGGCACTTGGAGGGAAGCTGAGCTCGAGTCCTGGAACGAAAAAGCTGGCATTGGACAAGTTGTTTTCCGTGATGATGGAAGTTCTGTCAAAATTGGTGCAGAAGAAATGGCACTATCTGAGTATGCTGAAGTAAGTGACTTAGAGAGTGATTCCAGCTTAGAGCAAACTGATTCTAGTGACTATGAGGAAGAGGAATTGCAAGGTTTAGGATTTCTGGAGAGTACCAACCTGCAGAGAGGTATTCAAACTGAAACAGCTATATTTGCCAAGTGGGAGAACCACACTAGAGGTGTAGCTTCCAAAATGATGGCTAGTATGGGATACAGAGAAGGAATGGGTTTAGGGGCAACTGGTCAGGGAATGCTGGACCCCATACCAGTGAAGGTGCTACCACCAAAGCAGTCCTTGGATCATGCACTTGAATTTCATAAAGAAGATAACCGAGAGAAGCAAGGCAAGAAACGGAGCAGGGGCGGTAAGAGAAAACGTGATAAGAAATTTGCAGAAGCGGTTCGTGCAGCAAAGGAGGAAGAAGAATCAGTATCAGATGTATTTGCATTGATAAACAATCAGCTGGCAATGCATGGTGAACATTTCAACAGCGGTTCAATGAAGAAGCAGCAAAGTAAAGGTTCAGAGGAAGGTAAAAGAGTGGATAGACGGGCATTGATTGCTTATGAGGATGAGGTGAAGGATTTGAAGATGCGGGTTGAAAAACTTGAACACATTGTAAATGCGAACCAAAAAGAGAAGGCTGTTTATGAGGCTGCAATGAGGAAATTAATTGAAACTCGCAAGGCTTTGGCAGAGGCTGAAGCAGCTCATGCCTCTGCCTCAAGTGCAGTTGTTAGCAAGGAAAAAGAGAAGAGATGGCTCAAGTTTTAG 1491 0.444 MMAMGSEEERVLENQLELQLQEQRDSLSAIDQALLSDPTNPELLAVHEELVQAIRDAEEGLLHLKRARLLQEADSALHSTNIFTEEEKVEPLDPTDVEPEPLEEKCYSVGSKCRFRHKDGRWYNGQVVQLDNSVAKVSFLTPTSENMLMCKFFLQQRCRFGSNCRLSHGVDVQLSSLKKYVPTLWKPSLVGSSIWAVSNANAGTWREAELESWNEKAGIGQVVFRDDGSSVKIGAEEMALSEYAEVSDLESDSSLEQTDSSDYEEEELQGLGFLESTNLQRGIQTETAIFAKWENHTRGVASKMMASMGYREGMGLGATGQGMLDPIPVKVLPPKQSLDHALEFHKEDNREKQGKKRSRGGKRKRDKKFAEAVRAAKEEEESVSDVFALINNQLAMHGEHFNSGSMKKQQSKGSEEGKRVDRRALIAYEDEVKDLKMRVEKLEHIVNANQKEKAVYEAAMRKLIETRKALAEAEAAHASASSAVVSKEKEKRWLKF* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0216 496 SUPERFAMILY CCCH zinc finger 145 169 IPR036855 GO:0046872
Apr2g0216 496 Pfam G-patch domain 297 339 IPR000467 GO:0003676
Apr2g0216 496 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 4 496 - -
Apr2g0216 496 Pfam CCCH-type zinc finger 149 169 IPR041367 -
Apr2g0216 496 SMART G-patch_5 295 341 IPR000467 GO:0003676
Apr2g0216 496 MobiDBLite consensus disorder prediction 476 496 - -
Apr2g0216 496 Coils Coil 425 452 - -
Apr2g0216 496 Gene3D - 122 181 - -
Apr2g0216 496 ProSiteProfiles Zinc finger C3H1-type profile. 144 171 IPR000571 GO:0046872
Apr2g0216 496 SMART c3hfinal6 144 170 IPR000571 GO:0046872
Apr2g0216 496 MobiDBLite consensus disorder prediction 343 369 - -
Apr2g0216 496 Coils Coil 456 476 - -
Apr2g0216 496 ProSiteProfiles G-patch domain profile. 297 343 IPR000467 GO:0003676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr2g0216 G-patch 2.2e-12 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0216 - - gmx:100794921 775.393