Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0213 ATGGAATTGGGTACCTCAAAATCTGAATTTCCAATGGCTTATCGTCGATCCCACTTGCGCAGCCACACTTACCACACCCTCGTTCACATCCTCTCTCACCTTTCTGCTTCTACTGCTTCACTTCAATCCTCAACTCAACCCCTCACTGTTTCTGATAATGGCAGTGGTAGAATGGGGCAAGAAAACAAGGAAAAGGAGCATAATTGCTCTGATTTTGTTGGTTCTGATTACATGGATCCTAAAGATACTGTAACACCCCAGGAGGAAATACAGGAGGTCCATGAGACCAATGAGAGGGTTGGAGACAAGAATATGGATTTTAGTTCCAATAAGATGGTCCTTGATGATATAGAACTTATGATGGGAATAGAGGAAATGTCTACACAAGCAAATGGTCTTGATAAGGAGCTGAAGCTAATGGATGAGTTGGAGCTGGCTGTGAAAGGAACTCAAGATGTAGTTTGTGATAATGGTTTGATCCCCGTAAACTTGGAATCAAATGAGAAACAAAATGGCAGCAGTGAAGTTGGGATGGATTTCCAAGTTGATGATCTTGAACTTTTGCATTCTGATGTGAAATCATCTGGAAATGCACGTCTGTTGCAGGACCCTGAAAAGCTTAATCTACTTGCCTCTGAGGGTTTTGATTTGTCTTCAACGTTTAATGTGTCCATATCAACAGAGGGTTCTCTTCCTACAACTGAAGTGGGTGAGTGTGAGAAGGAAGAACAATGTGGCCAAAAGGTTGCTGAAGCAATGCACATTTCTTTTGATATGGATATGAATAGCGAAGGATTGAATATAAGTGAAGAGGGTGGCCTATTGGATTCTTCTATTTTGAAAGATAATCTTGGAGTGTGGAATGGAGGAGAGAAAGCAGAAAAAATAATCTGTGTAGATAATACAGCAAATTCTTCCAATATTCTCATTGAAAATGGAGACATGGAAGAGGGAGAAATTTCTGCTGATTTGGTAATGAATGGAAGTTCATTTGATATGTCTTCTTCAGATGCTTTGATTTTACAGCAGATGAAAGTAGACGAGGTTCAGAAGCCCAAAAATGTAACTGGAAACATGGTATATTCTTGTAAGACAGGGAATGGAGAAAGTGAAAAGGGCTTTAAATCTAATTCCTTTATGGTAAATGCATTTCAAGATGCCAATAACAGTGGACAAGCAGAACCTAGGACTAGTGTTGAAAAAGGGATTGCATGTATGGAATTCGATAAGACAGGTGAGTGTGGTTCTTTGCTGAAATCTGGAAATAGCAAAGACAGATATGAAGGATGTAAAGGTATCAATGACTGGCTGACAAATTTTACTCAAAATCAAGTCCTGCACAGAGGTTTCTTGGAAGAAAATGTAACCACAGATCATGGAAACTCATCAGCAGTTAAGTTGGTTGATGCCAGTAGAAAGAGAAAGCATGGTTCTGGTTCTGAGGAGGAGGAGCAAACAGAGAAGTTGGTTGATGCAAGTAAAAAGAAAAAACGTGGTCCTATTTCTGAAGTGAAGAAAGAAAAAAAGAAGAAAAAGTATAGAAAGAAGCGAGCCGAAAAGAACAGAGAACAAGGTGTTAAGAGGTTGAAGTTGCAGCCAGTACAGAAACCAAAAACTGTCTCATACTGTCGCCATTATCTTAAAGGAAAATGCTATGAGGGTGACAAGTGTCAGTTTTCACATGATACAGTGCCGTTGACAAAATCAAAGCCATGTGTTCACTTTACTCGTCACTCTTGCATGAAAGGGGATGACTGCCCATTTGATCATCAGCTCTCAAAATATCCTTGCACCAATTTTGTGTCCAGAGGCTCTTGTAGCAGAGGTGATACTTGCATGTTTTCACACCAGGTACCGACAAACCAAGATATCCCTACACCGTCAAAAGTTTGTAAACCAGAGTTGACGTCCCCACTCCAATCAGGAAATACAAATTTCAGTACACCGCTTAACAATCCTAGCTCTAGTTCAGTCCAGCAAAGCCGCTTTACCAATTCTGGAGGAGTTCATTCTTGCATCAATGTAGAACATAAGGTGACACACACTGTACAGAAACAGCTTACACCACCCAAAGGAATTAATTTCATCAATGTTGCAAAATTATCATCCAGCCCTAGGACACCGAGACAAGGTATGGTAACAACAACCAAGGAAAATCCTGTACAAATTGGGACCCCTGCTGATCAAAGAGCATTTGGCACAACTCAAAAGGATGGGGCAATTGCCAAGAAATTGCAAGCTGTGACGCCTAAGGGAATTAACTTTCTTTCTTTTGGAAAAGGTTCTGTTTGCAGTTTTAAAAGTCCTATTCACTCTGATGTGAATAGGCAAACTGGTATCAAGTTGCCTCAATTACTCAATTTTGGTTTGCCTGAGCAGCCAAGTTCATCTCTATATAAGGATGATTGCAGCAAAGTTAGTGACAGAACAAAACAGAATGTACCACAGACTGATCTATTCTCTAATGAGTTTCTAAACGTTAATCAAGCTGTAGCAAAAGGAATGAAATTGGCATTTCCAGGGAAAAATTCAATTGACGCTTCTATAAGGGATCATGGCCTCAGGAAATCAGTTCAAGAAGGAAAAAAGTCATCTGATAATTCCCACACTTCAAATATGATCTCACCTATGGTTCTTCGTCCATTTGTTTCAAACCAGTATTCTGAACGCATAATATCTGGTTTTCATAAACATGCCTCAAACTCAGGCCAAAGGGCACTCTTATCAACTTTAGCATTTGCAGCAGAACATGAATCAGATATTAAGATGAAAGACCCTGCTGATGCTTCGTGTGTATGA 2799 0.3994 MELGTSKSEFPMAYRRSHLRSHTYHTLVHILSHLSASTASLQSSTQPLTVSDNGSGRMGQENKEKEHNCSDFVGSDYMDPKDTVTPQEEIQEVHETNERVGDKNMDFSSNKMVLDDIELMMGIEEMSTQANGLDKELKLMDELELAVKGTQDVVCDNGLIPVNLESNEKQNGSSEVGMDFQVDDLELLHSDVKSSGNARLLQDPEKLNLLASEGFDLSSTFNVSISTEGSLPTTEVGECEKEEQCGQKVAEAMHISFDMDMNSEGLNISEEGGLLDSSILKDNLGVWNGGEKAEKIICVDNTANSSNILIENGDMEEGEISADLVMNGSSFDMSSSDALILQQMKVDEVQKPKNVTGNMVYSCKTGNGESEKGFKSNSFMVNAFQDANNSGQAEPRTSVEKGIACMEFDKTGECGSLLKSGNSKDRYEGCKGINDWLTNFTQNQVLHRGFLEENVTTDHGNSSAVKLVDASRKRKHGSGSEEEEQTEKLVDASKKKKRGPISEVKKEKKKKKYRKKRAEKNREQGVKRLKLQPVQKPKTVSYCRHYLKGKCYEGDKCQFSHDTVPLTKSKPCVHFTRHSCMKGDDCPFDHQLSKYPCTNFVSRGSCSRGDTCMFSHQVPTNQDIPTPSKVCKPELTSPLQSGNTNFSTPLNNPSSSSVQQSRFTNSGGVHSCINVEHKVTHTVQKQLTPPKGINFINVAKLSSSPRTPRQGMVTTTKENPVQIGTPADQRAFGTTQKDGAIAKKLQAVTPKGINFLSFGKGSVCSFKSPIHSDVNRQTGIKLPQLLNFGLPEQPSSSLYKDDCSKVSDRTKQNVPQTDLFSNEFLNVNQAVAKGMKLAFPGKNSIDASIRDHGLRKSVQEGKKSSDNSHTSNMISPMVLRPFVSNQYSERIISGFHKHASNSGQRALLSTLAFAAEHESDIKMKDPADASCV* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0213 932 MobiDBLite consensus disorder prediction 42 57 - -
Apr2g0213 932 MobiDBLite consensus disorder prediction 641 663 - -
Apr2g0213 932 Gene3D - 499 567 - -
Apr2g0213 932 PANTHER PROTEIN SUPPRESSOR OF SABLE 290 928 - -
Apr2g0213 932 Gene3D - 568 630 - -
Apr2g0213 932 Pfam RNA-binding, Nab2-type zinc finger 571 590 - -
Apr2g0213 932 Pfam RNA-binding, Nab2-type zinc finger 596 616 - -
Apr2g0213 932 SUPERFAMILY CCCH zinc finger 595 627 IPR036855 GO:0046872
Apr2g0213 932 ProSiteProfiles Zinc finger C3H1-type profile. 537 564 IPR000571 GO:0046872
Apr2g0213 932 MobiDBLite consensus disorder prediction 468 500 - -
Apr2g0213 932 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 290 928 IPR045124 GO:0003723|GO:0045892
Apr2g0213 932 MobiDBLite consensus disorder prediction 42 65 - -
Apr2g0213 932 SMART c3hfinal6 594 618 IPR000571 GO:0046872
Apr2g0213 932 SMART c3hfinal6 566 592 IPR000571 GO:0046872
Apr2g0213 932 SMART c3hfinal6 536 563 IPR000571 GO:0046872
Apr2g0213 932 MobiDBLite consensus disorder prediction 850 873 - -
Apr2g0213 932 ProSiteProfiles Zinc finger C3H1-type profile. 566 590 IPR000571 GO:0046872
Apr2g0213 932 SUPERFAMILY CCCH zinc finger 537 562 IPR036855 GO:0046872
Apr2g0213 932 Coils Coil 501 523 - -
Apr2g0213 932 ProSiteProfiles Zinc finger C3H1-type profile. 591 619 IPR000571 GO:0046872
Apr2g0213 932 Pfam CCCH-type zinc finger 543 562 IPR041367 -
Apr2g0213 932 MobiDBLite consensus disorder prediction 501 518 - -
Apr2g0213 932 MobiDBLite consensus disorder prediction 461 525 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr2g0213 zf-CCCH_2 0.069 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0213 - - aprc:113854397 1831.99