Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0189 ATGGAGCGTATTAATGAAGCTGCAAATTGTGAAAATGGGTTGCTTGCGATGGCCGGTGGCAATGAAAGAGGCGGCGGTGTTGGTGGTGAAGGTGGTGGAAACGTGGAAGAGGTGACTCTTAAAAAGGGTCCTTGGACAACCACAGAGGATGCTATTCTAATAGATTATGTAACAAAGCATGGTGAAGGAAATTGGAATGCGGTGCAAAGGAACACAGGGCTTAATAGATGTGGGAAGAGTTGTAGACTCAGATGGGCTAATCATTTAAGGCCCAATTTGAAGAAGGGTGCTTTCTCCCCTGAGGAAGAGAAGCTCATTGTTGAGCTACATGCACAATTTGGCAACAAATGGGCTCGAATGGCTGCTTTGTTACCTGGAAGAACAGACAATGAAATCAAGAACTACTGGAACACAAGGATCAAGAGGCGCCAGAGACAGGGTCTTCCTCTCTATTCAGATGACCATGATCATCATTCACCATCCACACCCACCAACACCTCTTCCCCATGTGTCACCCCAACAGGATCAAACCCCAACACTGCCCCAAAGTTTGAGTTTTTAAACCAACATCAACACCACCCTCTATCTCCAACTGCACCACATCATTATTCTCCTCTCACTTCCCCTCTCCAACATAGACCACCCTCAAACTATAATTCACCTCACACTTTCTTAGACCCTTCGCCTCTTCCACTATCCTCATCTTCACCTTCCCCTCTCTCCTTCACATTCCAAAGACCTGCACCAGTTCTATGCACTCCTCTTCGCTTCAAGCGCTACCGTTCCACTCCAAGTTACAACCTCCAAGCCCCTTCCATCACCCCTTTTTCATCTTCACTCTCTGATCCTACTTTGACTACCCATTTAACTGATCCTGAAGGTTTCAGGTTCCCAAGTTCAAGTTTTTCTCAGTTTTTTCAACCCAATTTGTTAGACTCCGATCGAGGGGTTTCTTCTTCTTCCTCTTCCTCTTCAATTTTCCCGACCAAGTTTGAACTCCCTTCAAATCATTTCTCAAAACCACTACTCCAAGAGCAAGATATTAAGCTTGATATTGAGTTCAATGATCCTGCTTTTCAAACCAGTAGTGGCTTGCTTGAGGATCTTCTCTTGGAGGCTCAAGCACTGGCTTCTGGCCAGAACATAAAGAAACGAAGTTACTTGAGTTTGAATGAAGGAAATGATGTGTTTGATGGGTGCCAAAGCTTTGAGGACTTGCCACTTAGTTCTGTTTATTGGTCTTCTTCTACTCCAGGATCCAAACCAAAGGAAGAAGCACCAGACCTGAGCAAATTTATGAATGAGGACTTGTCATCATTGCTTACAGTACTTCCTTCTTCCAATGCTCCAGTTCAAGATTGGCATAATAACAATGCACCAGAAGCCTCCAATGTCCATTCCTCTGGTAGTGTCATGACAGATGACAATTTTGGACTTGACATCAAACCCATAGCTTCTTTGTTTCCTCTTACCAACACAACTAACCATAATGAAAACCCTGGTTGCTACACTTGGGACAATTTACCTGGACTCTGCTAA 1539 0.4438 MERINEAANCENGLLAMAGGNERGGGVGGEGGGNVEEVTLKKGPWTTTEDAILIDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSPEEEKLIVELHAQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDDHDHHSPSTPTNTSSPCVTPTGSNPNTAPKFEFLNQHQHHPLSPTAPHHYSPLTSPLQHRPPSNYNSPHTFLDPSPLPLSSSSPSPLSFTFQRPAPVLCTPLRFKRYRSTPSYNLQAPSITPFSSSLSDPTLTTHLTDPEGFRFPSSSFSQFFQPNLLDSDRGVSSSSSSSSIFPTKFELPSNHFSKPLLQEQDIKLDIEFNDPAFQTSSGLLEDLLLEAQALASGQNIKKRSYLSLNEGNDVFDGCQSFEDLPLSSVYWSSSTPGSKPKEEAPDLSKFMNEDLSSLLTVLPSSNAPVQDWHNNNAPEASNVHSSGSVMTDDNFGLDIKPIASLFPLTNTTNHNENPGCYTWDNLPGLC* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0189 512 CDD SANT 44 89 IPR001005 -
Apr2g0189 512 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 89 IPR017930 -
Apr2g0189 512 MobiDBLite consensus disorder prediction 161 239 - -
Apr2g0189 512 Gene3D - 97 159 - -
Apr2g0189 512 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 144 IPR017930 -
Apr2g0189 512 CDD SANT 97 138 IPR001005 -
Apr2g0189 512 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 27 507 - -
Apr2g0189 512 Pfam Myb-like DNA-binding domain 95 138 IPR001005 -
Apr2g0189 512 Pfam Myb-like DNA-binding domain 42 89 IPR001005 -
Apr2g0189 512 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 27 507 - -
Apr2g0189 512 ProSiteProfiles Myb-like domain profile. 37 89 IPR001005 -
Apr2g0189 512 SUPERFAMILY Homeodomain-like 40 136 IPR009057 -
Apr2g0189 512 Gene3D - 41 94 - -
Apr2g0189 512 SMART sant 41 91 IPR001005 -
Apr2g0189 512 SMART sant 94 142 IPR001005 -
Apr2g0189 512 MobiDBLite consensus disorder prediction 149 239 - -
Apr2g0189 512 ProSiteProfiles Myb-like domain profile. 90 140 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0189 Apr-Chr2 2523505 2525361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0189 24 512 MYB Transcription Factor Family AT4G26930 37.126 5.50e-72 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr2g0189 Myb_DNA-binding 4.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0189 - - gmx:102659401 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0189 2 2523505 2525361 Apr2g0189 2 2523505 2525361 ECH