Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0187 ATGTTTTCCCTCACTCTCCCTAGTGAGGTCCCTTCAAAATCCATCTTTTCTTTCCCCCAAACCCGGTTCAACCAAACCCGGTTCAAACCCACCCCGGTTCGCTGCGGCATTCGCGAACTCCGAGAACGAATTGTAACGGTGAAGAACACGCAAAAGATCACCGAAGCAATGAAGCTTGTAGCCGCCGCCAGAGTCCGTCGAGCTCAAGAAGCTGTCGTTAACGGAAGACCCTTTTCCCAAAAACTCACCGAAATGTTAAACGACATCAACCAACATCTCCAAAACGACGACGTTTTTGTACCATTGACCGTCGTTAGACCCGTCAGAAAAATCGCCCTTGTAGTCATCACAGGTGACCGTGGCCTCTGCGGCGGTTTCAACAACTCAGTGATAAGAAAGGCCATTACCCGAATCGAAGAATTGAAGAAACTCGATGTGGGGTGTGTTGTTATTAGTGTTGGCAAAAAGGGTAACTCTTTTTTTGGTCACAAAAACGACCCTTTTGTCGAAGTTGATAGGTTCGTCGAAAGTGGCGGTTTTCCAACCATAAAAGAGGCTCAGGTTATTGCTGATGATGTTTTTTCACTCTTTGTTAGTGAGGAAGTTGATAAGGTTGAGCTTGTGTACACAAAGTTTGTGTCTTTGGTGAAGTTTGATCCTGTGATTCACACTTTGTTGCCTTTGTCAGCAAGAGGAGAGGTTTGTGATGTGAATGGGAATTGTGTTGATGCAATGGAGGATGAGTTTTTCAGGTTGAGTTCTAAAGATGGGAAGTTATCTGTGGAGAGGGATGTTGTGAGGTTGAGAAAGAAGAAGAGTGATGAGGTGTTTCCCCTTATGGAGTTTGAACAAGACCCGGTTCAGATTCTTGATGCCATGTTGCCTCTTTATTTGAATAGTCAGATTTTGAGGGGGTTGCAAGAATCTGTGGCTAGTGAGCTTGCTGCTAGAATGGGTGCCATGTCTACTGCCACTGATAATGCTGTTGAGTTGAAGAAGAGTCTCTCAGTTGCGTACAATAGGGAACGCCAGGCAAAGATCACTGGGGAGTTGTTGGAGATTGTTGCTGGAGCTGAGGCATTGCCACAAATTGATTGA 1098 0.4554 MFSLTLPSEVPSKSIFSFPQTRFNQTRFKPTPVRCGIRELRERIVTVKNTQKITEAMKLVAAARVRRAQEAVVNGRPFSQKLTEMLNDINQHLQNDDVFVPLTVVRPVRKIALVVITGDRGLCGGFNNSVIRKAITRIEELKKLDVGCVVISVGKKGNSFFGHKNDPFVEVDRFVESGGFPTIKEAQVIADDVFSLFVSEEVDKVELVYTKFVSLVKFDPVIHTLLPLSARGEVCDVNGNCVDAMEDEFFRLSSKDGKLSVERDVVRLRKKKSDEVFPLMEFEQDPVQILDAMLPLYLNSQILRGLQESVASELAARMGAMSTATDNAVELKKSLSVAYNRERQAKITGELLEIVAGAEALPQID* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0187 365 Hamap ATP synthase gamma chain [atpG]. 34 361 IPR000131 GO:0015986|GO:0045261|GO:0046933
Apr2g0187 365 Gene3D ATP synthase, gamma subunit, helix hairpin domain 35 102 - -
Apr2g0187 365 Gene3D ATP synthase, gamma subunit, helix hairpin domain 260 361 - -
Apr2g0187 365 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 37 361 IPR000131 GO:0015986|GO:0045261|GO:0046933
Apr2g0187 365 Pfam ATP synthase 37 361 IPR000131 GO:0015986|GO:0045261|GO:0046933
Apr2g0187 365 CDD F1-ATPase_gamma 37 358 IPR000131 GO:0015986|GO:0045261|GO:0046933
Apr2g0187 365 Gene3D - 103 230 - -
Apr2g0187 365 PANTHER ATP SYNTHASE GAMMA CHAIN 7 361 IPR000131 GO:0015986|GO:0045261|GO:0046933
Apr2g0187 365 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 36 361 IPR035968 GO:0015986|GO:0045261|GO:0046933
Apr2g0187 365 ProSitePatterns ATP synthase gamma subunit signature. 347 360 IPR023632 -
Apr2g0187 365 PRINTS ATP synthase gamma subunit signature 108 127 IPR000131 GO:0015986|GO:0045261|GO:0046933
Apr2g0187 365 PRINTS ATP synthase gamma subunit signature 203 220 IPR000131 GO:0015986|GO:0045261|GO:0046933
Apr2g0187 365 PRINTS ATP synthase gamma subunit signature 308 327 IPR000131 GO:0015986|GO:0045261|GO:0046933
Apr2g0187 365 PRINTS ATP synthase gamma subunit signature 339 360 IPR000131 GO:0015986|GO:0045261|GO:0046933
Apr2g0187 365 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 7 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0187 Apr-Chr2 2503766 2505268 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0187 30 361 Primary Pumps ATPases AT1G15700 71.726 7.79e-173 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0187 K02115 - jre:108984192 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0187 2 2503766 2505268 Apr2g0187 2 2503766 2505268 ECH