Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0185 ATGCCCTCTGCTCAGGATCCATTTTACGTTGTCAAGGCCGAGATTCAAGATTCTATTGATAAGTTGCAATCTACCTTTCACCAATGGGAAAGAACTTCTGATGCTGTGGAACGAGGACATCTTACGAAGGAGGTTGTTGCTGGATGCGAAAGCTTAGAATGGCAGGTGGATGAATTGGATAAAGCAATTGCTGTAGCATCTAGAGATCCTTCTTGGTATGGCATTGATGAAGCAGAGGTTGAAAGCCGGAAGAGATGGACAAACACTGCTCGTACTCAGGTTGGCACAATGAAGAAAGCAGCAGAAGCTGGAAAAGGATCAAGTACAATAAACCATGCTAGTGTAAATGGGATGCGTCGAGAACTCATGAAGCTACCAAATTCTCATCAAACCAATGCATCCAACCAGTATGCTTCCCAAGATAATGATGATTTCATACAATCAGAATCAGATAGACAGACGCTTCTTATAAAGAGACAGGATGAGGAATTGGATGAGCTTAGTGAAAGTGTACGGAGAATTGGAGGTGTTGGACTTACAATACATGATGAACTTGTTGCACAGGAAAAAATTATAGATGAACTCGGTACCGAGATGGACAGTACAACAAATCGTCTTGATTTTGTCCAAAAAAAAGTGGCAATGGTTATGAAGAAGGCTAGTGCAAAGGGCCAGATCATGATGATATTGGGTTTGTTGGCCCTGTTCATCTTCCTCTTCATCTTAGTATTCTTCACCTAG 741 0.4184 MPSAQDPFYVVKAEIQDSIDKLQSTFHQWERTSDAVERGHLTKEVVAGCESLEWQVDELDKAIAVASRDPSWYGIDEAEVESRKRWTNTARTQVGTMKKAAEAGKGSSTINHASVNGMRRELMKLPNSHQTNASNQYASQDNDDFIQSESDRQTLLIKRQDEELDELSESVRRIGGVGLTIHDELVAQEKIIDELGTEMDSTTNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFIFLFILVFFT* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0185 246 Coils Coil 49 69 - -
Apr2g0185 246 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 154 216 IPR000727 -
Apr2g0185 246 SUPERFAMILY SNARE fusion complex 152 216 - -
Apr2g0185 246 PANTHER SYNTAXIN PROTEIN 1 245 - -
Apr2g0185 246 Pfam SNARE domain 191 242 IPR000727 -
Apr2g0185 246 Coils Coil 192 212 - -
Apr2g0185 246 ProSitePatterns Syntaxin / epimorphin family signature. 160 199 IPR006012 GO:0005484|GO:0006886|GO:0016020
Apr2g0185 246 SMART tSNARE_6 149 216 IPR000727 -
Apr2g0185 246 Gene3D - 2 103 - -
Apr2g0185 246 PANTHER SYNTAXIN 1 245 IPR045242 -
Apr2g0185 246 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Apr2g0185 246 CDD SNARE_Qc 157 214 - -
Apr2g0185 246 SUPERFAMILY t-snare proteins 5 100 IPR010989 GO:0016020|GO:0016192
Apr2g0185 246 Gene3D - 161 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0185 Apr-Chr2 2490139 2494280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0185 55 246 SNARE and Associated Proteins AT1G28490 70.312 1.85e-94 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0185 K08500 - gmx:100787129 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0185 2 2490139 2494280 Apr9g1744 9 26530453 26534379 PCT