Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0138 ATGTCGCCCAGCTTCGTTTTCGAAGCCCCGAGTGACGAGGAAATCGAACACTTCGAAGAAGAGGGAGAAGAAGAATCAGAAGAAGCAGAGTCAGCTTCAGAATCAGAAGATGAACAGAAAGAAGCGCGAGTGTCGAAGAAGAAAACACAGTCTCCATGGGACTTTGCTAAATACACTGAATCAGTGGCCGAAGAACACGCTCGCAGAAGCACAACCTCTGTGGACGACAAAATCTCCAAAGCACTGAGACAACGTTCCACGCCGGTCGTTGCTGTGCCTGACAGAGAGGACAACAGCTCCGAGTCCGAATCTGATCAACAAGAAGATTATAGACCGGATGAAGATGATGTGGAAGAGGGTAATGGTGGTGATAGCAAGTCCTTTTTTGCTCCTTCTGATGGAGCCTCTTTCCATGCTGATTCCTTCTTGCAGCTCAATTTGTCTCGCCCCTTACTTCGGGCTTGTGAGGCCTTGGGGTATGCTAAACCAACACCAATTCAGGCAGCATGTATACCATTGGCATTGACTGGTCGTGACATATGTGGAAGTGCCATTACCGGGTCAGGGAAGACTGCTGCGTTTGCTCTACCTACTTTGGAGAGATTGTTGTTTCGTCCAAAACGCGTTCGTGCAATAAGAGTCCTCATTCTTACTCCAACGAGAGAGTTGGCAGTCCAAGTTCATAGTATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTTGTTGGAGGTCTGTCAACAAAGGTGCAAGAGGCTGCCTTGAGATCGATGCCAGACATAGTTGTGGCTACTCCAGGACGCATGATAGATCATTTACGCAACTCTATGTCAGTGGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCAGATCGTCTTTTGGAGCTTGGATTTAGTGCTGAAATTCATGAACTTGTTCGCTTGTGTCCCAGAAAAAGGCAGACCATGCTTTTTTCAGCAACCATGACTGAGGAAGTTGATGAACTTATTAAACTTTCCCTATCAAAACCTTTGCGTCTTTCTGCTGATCCATCTGCAAAACGGCCTGCAACCTTGACTGAGGAGGTTGTTAGAATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTATTTCTAAAGTTATCATCTTCAGTGGAACAAAGCAAGCTGCACACAGGTTGAAGATTGTTTTTGGATTAGCTGGCTTAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAAGCTTTGGAACAGTTCAGGAAGCAGCAAGTGGATTTTTTGGTTGCAACTGATGTGGCTGCTCGTGGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCGCGTGATCTTACCAGCTATGTTCATCGAGTGGGTCGGACTGCAAGAGCTGGCAGAGAAGGATATGCTGTCACATTTGTGACTGATAATGACCGGTCACTATTGAAAGCTATTGCAAAGAGGGCTGGTTCAAAGCTGAAAAGCCGCATTGTTGCAGAGCAATCTATACTTAAATGGTCTCATATAATTGAGCAAATGGAGGATCAAATTGCTGAAGTACTTCAAGAAGAGAGGGAAGAAAGAGTCTTAAGGAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACATGATTGCACATAAGGAAGAGATCTTTTCCCGCCCCAAAAGAACCTGGTTTGTCACAGAGAAAGAGAAAAAGCTGGCTGCAAAAGCAGCAAAGGACAAGAGTTCTGGAAGAGAGGTAATTAGTGCTGAACAAGCTGAAGACCTCAGAATGAAGGAAAAGAGGAAGCGAGAGCGAGAGAAAAATTTGCCTAGAAAGAAGCGTAGAAAGTTGGAAGCGGCTAGAGAAATGTTGGAGGATGAGGGGCAGGATGACAATCCAGTGGAAGTTGGAATATACACTTTGTTCCTCACTTTCTGTTGTGCTGAAAATGAAACGAAGGCTAAGGGAACAAATAAGAAAGAAAAGGGTGGAATGTCACTTGTAGATCTTGCTTATCGACGAGCCAAAGCAGTGAAGGCTGTCAAGAGGGCATTAGATTCTGGCAAGATTGTGAAAAAGAGTACAAAGAAATCTAGTCATCCTTCCAGAAAGACTTCTTCAAGAACCGAAGAGATGCGAGAGCTATTCCAGACTGACATGAAAGATAAAGAGCCAAAAAGAAGAGGTGTTGGAACGGGAAAGAAGTCCAAGAGTTCATTCAAAAGCAAGTCAAGGTACAAGCGCAAGTAG 2280 0.4461 MSPSFVFEAPSDEEIEHFEEEGEEESEEAESASESEDEQKEARVSKKKTQSPWDFAKYTESVAEEHARRSTTSVDDKISKALRQRSTPVVAVPDREDNSSESESDQQEDYRPDEDDVEEGNGGDSKSFFAPSDGASFHADSFLQLNLSRPLLRACEALGYAKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKRVRAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPRKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSAKRPATLTEEVVRIRRMREVNQEAVLLAMCSKTFISKVIIFSGTKQAAHRLKIVFGLAGLKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSILKWSHIIEQMEDQIAEVLQEEREERVLRKAEMEATKAENMIAHKEEIFSRPKRTWFVTEKEKKLAAKAAKDKSSGREVISAEQAEDLRMKEKRKREREKNLPRKKRRKLEAAREMLEDEGQDDNPVEVGIYTLFLTFCCAENETKAKGTNKKEKGGMSLVDLAYRRAKAVKAVKRALDSGKIVKKSTKKSSHPSRKTSSRTEEMRELFQTDMKDKEPKRRGVGTGKKSKSSFKSKSRYKRK* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0138 759 Pfam DEAD/DEAH box helicase 164 334 IPR011545 GO:0003676|GO:0005524
Apr2g0138 759 MobiDBLite consensus disorder prediction 59 82 - -
Apr2g0138 759 Gene3D - 360 642 IPR027417 -
Apr2g0138 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 651 IPR027417 -
Apr2g0138 759 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 291 299 IPR000629 -
Apr2g0138 759 Pfam Helicase conserved C-terminal domain 381 480 IPR001650 -
Apr2g0138 759 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 356 519 IPR001650 -
Apr2g0138 759 MobiDBLite consensus disorder prediction 713 741 - -
Apr2g0138 759 MobiDBLite consensus disorder prediction 584 624 - -
Apr2g0138 759 MobiDBLite consensus disorder prediction 584 614 - -
Apr2g0138 759 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 140 168 IPR014014 GO:0003724
Apr2g0138 759 Gene3D - 99 347 IPR027417 -
Apr2g0138 759 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 171 345 IPR014001 -
Apr2g0138 759 Coils Coil 599 619 - -
Apr2g0138 759 MobiDBLite consensus disorder prediction 697 759 - -
Apr2g0138 759 MobiDBLite consensus disorder prediction 1 130 - -
Apr2g0138 759 PANTHER RNA HELICASE 45 731 - -
Apr2g0138 759 MobiDBLite consensus disorder prediction 742 759 - -
Apr2g0138 759 Coils Coil 525 565 - -
Apr2g0138 759 MobiDBLite consensus disorder prediction 36 50 - -
Apr2g0138 759 MobiDBLite consensus disorder prediction 13 35 - -
Apr2g0138 759 CDD SF2_C_DEAD 357 489 - -
Apr2g0138 759 Coils Coil 15 35 - -
Apr2g0138 759 PANTHER BNAA01G17110D PROTEIN 45 731 - -
Apr2g0138 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 500 IPR027417 -
Apr2g0138 759 SMART helicmild6 395 480 IPR001650 -
Apr2g0138 759 SMART ultradead3 159 360 IPR014001 -
Apr2g0138 759 CDD DEADc_DDX27 151 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0138 Apr-Chr2 2002552 2011243 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0138 128 497 Eukaryotic Initiation Factors Gene Family AT3G13920 33.512 1.33e-52 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0138 K13181 - gmx:100776684 1098.19