Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0109 ATGTGGACACGGAAATTCTTCTCTTCACGCACTAAGGTGTTACTCTTATGGGTCTTTCAAATAATGCTGACACTACCACAACACAAGTGCGAAGCAAATAATCCCCAAACATGCGCACCTTCTTCATGCGGCAAAATCAGCAACATAAGACACCCGTTTCGGCTGAAGGGTGACCCAACAACATGCGGGGATCCCAGGTACGAGTTAGCTTGCGAAAACAACATCGCTGTGTTGCCTTTGTTTGCTGGTAAATACTATGTGCAAGCAATTCACTACAGTAACTTCACTATTCGGGTGGTGGATCCTGCTGTTCATGAGGCTAATTGTTCCTCTGTTCCTCGCTTTTTTTTATCCGCCTCCAATTTCACTGATTTCTACAACCGTTCTTCCGCCTATTCCACTACTCCTTATCAAGCTACTCGAGATACATCCCAAGGGTCTAGCATTCTATTCCAACACATAATATACTTAAATTGTAGAAATCCGGTGAAGGATCACAGATACGTGGATACTGCTCCATGCGTCAATTGGGGTTCCAAGGGCCATGCTTATGCAATTGTAGGGGACATTTTGCCTATGGATTTAAAAGTTGGTTGCCAAGTGAAGATGGCTGCTGCCACATCCGTTTTTGGTTTCGATCCCCTTTCTTATTTTGATGATTATGATTTGCGTGGGCAGAATTTTTCCTATGCTGAAATTCATAGGATGTTGGGCTTTGGATTTGAAGTTTCGTGGATGACTGTTCCTTGTGAACATCTCTGTGAAAACTCATCTAACTGTTATTGCTACTTTAACGAAACCAGCAAGCGTCCTCAAAGTTATGACATGTCTGATTACTGTTATACTCCATTGGGATTTCGAGTCAGATGTGGAATTATATCGAAGCAACGCATATTTGTAGAAGATATTTTGTCTGGCATAGGAAAAGGCTTTCTACAAATAAGAGGCGTGAAAATAGGCCCCTCCACTGAGGGCTACGTTGATTCTAAACTTGCTATTGAGTTAGGAAGAATCACAGGAAGATATGTCTTGCCACCATGCATTATTATAAGATTGATATTGACTTTCATAGTTCTCTTTGCAATCCTAATATATAAATGGCGAAGAAGACATATATCCATGTATGAAATTATTGAAAATTTTCTTCAAGGAAACACATTGGTGCCAATAATGTATTCTTACAGAGAGATAAAGACTATGACTAAAGGTTTTAAGTACAAGCTTGGTGAAGGAGGGTACGGTTCTGTGTATAAAGGAAAGTTACGCAGTGGATCTTTTGTAGCCATAAAAATGTTGGGTAAACCTAAGGCTAATGGACAAGAATTTATTAGCGAAATCGCAACTATAGGAAGAATACACCATGCCAACGTTGTGCGACTTATTGGATTTTGTGTTGAGGGGTCAAAACGTGCTCTTGTTTATGAATTCATGCCCAATGGCTCTCTAGATAGATACATTTCATCCAAAGAAGATAACATCTCTTTACCCTGTGATCAAATGTATAAGATATCTCTTGGAGTGGCTCGAGGTATTGCTTATTTACATCGAGGGTGTGACATGCAAATTTTGCATTTTGATATCAAGCCTCATAATATCCTTCTTGATGAGAATTTTGTTCCCAAAGTTTCAGACTTTGGTCTAGCAAGGCTTTATCCTGTTGATAATAGCATTGTTACTTTGACAGCAGCAAGAGGAACAATTGGTTACATGGCTCCAGAATTATTCTACCAAAATATAGGAGGAGTATCATACAAGGTTGATGTTTATAGCTTTGGAATGCTTTTGATGGAAATGGCAAGCAAGAGAAGGAATTTGAATCCACATGCAGATGATTCAAGTAAATTATTCTTTCCCTTTTGGATTTACAATCAATTGGTTGAAGAAAAGGATATAGAAATTGGGGAACTTACCAACGAGGAAAAGAATAATATAAAGAAGATGTTCAAAATTGCCTTATGGTGTATACAATTGAAACCTAGTGATCGTCCTCCAATGATAAAAGTAATAGAAATGCTGGAAGGAGATGTTGAGAGCATCGAAATGCCTCCAAAACCTTCTTTGTATCCAAATGAAATGATTCAAGGAGATACTAAAACCAACTCTGATACAACCATATCAAGTGATGTTGTTAGCTTAATTAGTTGA 2145 0.3865 MWTRKFFSSRTKVLLLWVFQIMLTLPQHKCEANNPQTCAPSSCGKISNIRHPFRLKGDPTTCGDPRYELACENNIAVLPLFAGKYYVQAIHYSNFTIRVVDPAVHEANCSSVPRFFLSASNFTDFYNRSSAYSTTPYQATRDTSQGSSILFQHIIYLNCRNPVKDHRYVDTAPCVNWGSKGHAYAIVGDILPMDLKVGCQVKMAAATSVFGFDPLSYFDDYDLRGQNFSYAEIHRMLGFGFEVSWMTVPCEHLCENSSNCYCYFNETSKRPQSYDMSDYCYTPLGFRVRCGIISKQRIFVEDILSGIGKGFLQIRGVKIGPSTEGYVDSKLAIELGRITGRYVLPPCIIIRLILTFIVLFAILIYKWRRRHISMYEIIENFLQGNTLVPIMYSYREIKTMTKGFKYKLGEGGYGSVYKGKLRSGSFVAIKMLGKPKANGQEFISEIATIGRIHHANVVRLIGFCVEGSKRALVYEFMPNGSLDRYISSKEDNISLPCDQMYKISLGVARGIAYLHRGCDMQILHFDIKPHNILLDENFVPKVSDFGLARLYPVDNSIVTLTAARGTIGYMAPELFYQNIGGVSYKVDVYSFGMLLMEMASKRRNLNPHADDSSKLFFPFWIYNQLVEEKDIEIGELTNEEKNNIKKMFKIALWCIQLKPSDRPPMIKVIEMLEGDVESIEMPPKPSLYPNEMIQGDTKTNSDTTISSDVVSLIS* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0109 714 SMART serkin_6 402 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0109 714 Pfam Wall-associated receptor kinase galacturonan-binding 38 101 IPR025287 GO:0030247
Apr2g0109 714 ProSiteProfiles Protein kinase domain profile. 402 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0109 714 SUPERFAMILY Protein kinase-like (PK-like) 387 673 IPR011009 -
Apr2g0109 714 Pfam Protein kinase domain 406 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0109 714 Gene3D Transferase(Phosphotransferase) domain 1 477 681 - -
Apr2g0109 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Apr2g0109 714 CDD STKc_IRAK 408 674 - -
Apr2g0109 714 Gene3D Phosphorylase Kinase; domain 1 383 476 - -
Apr2g0109 714 ProSitePatterns Protein kinases ATP-binding region signature. 408 430 IPR017441 GO:0005524
Apr2g0109 714 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 9 696 - -
Apr2g0109 714 PANTHER RUST RESISTANCE KINASE LR10-RELATED 9 696 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0109 Apr-Chr2 1644783 1650304 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0109 10 688 Receptor kinase-like Gene Family AT5G38260 33.672 2.65e-105 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Apr2g0109 Pkinase 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0109 - - mtr:MTR_1g027050 806.208