Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0102 ATGGAAAGTGAAAAGTCTAATGTTTCAAAGGCTGAAGAACTTAAACTCCTTGCTAATGAAGCATTCAATGCTCGAAAATATGCTCAAGCCATTGATCTATATACACAAGCAATTGAGCTAAACAGTCAAAATGCAGTTTACTTGGCTAATCGTGCCTTTGCCCATCTTCGGCTTGAGGAATATGGTAGTGCAATACAAGATGCTACAAAAGCTATTGAAATTGATCCTAAATATTCAAAGGGTTATTACAGGCGAGGTGCTGCTCATCTTGGGCTGGGAAAGTTCAAGGAAGCGCTGAAAGATTTTCAGCAGGTAAAAAAAATGTGTCCAAATGATCCTGATGCAACAAAGAAATTGAAGGAATGTGAAAAAGCAGTTATGAAACTTAAATTTGAAGAAGCAATTGCTGTACCAGAGTCTCAAAGGCGTTCAGTAGCAGAATCCATAGATTTCCATTCGATAGGAAAGGGCCGCAATTCTTCGGTGCCAACCGAAGTGGCCATAGCAGCAGTGACAGTAGCAGTTATGGCAGCAGCGGTGATGTTGTTCAGGACATCAAAGACCACAATAGTAGTTGCAATTGTGGTTGGTTTGCTGTTGCTCCTTGGGGCTTTTTGGTGGACTGGCCACGATACTGATGTCGAGCCACAATATTCAGGAGCAAGAATAGAAGGGGATGTTGTTACTTTGGATTTTGTAAAGAAGATGATGGAAGATTTCAAGAATCAGAAGTGCTTGCATAAACGGTATGCATTCCAAATTGTATTGCAAACAAGAGAGATGTTGCAAGCTTTGCCTTCTCTTGTTGACATAAATGTTCCTGATGGCAAACATTTTACTGTTTGTGGTGATGTGCATGGTCAGTACTATGATCTTCTGAATATTTTTGAGCTTAATGGGCTTCCTTCAGAAGAGAATCCGTATCTATTTAATGGTGATTTTGTGGATAGGGGATCTTTTTCTTTGGAAGTTATCCTCACTTTGTTTGCATTTAAGTGCATGTCTCCATCAGCCATATATTTAGCTAGGGGAAATCATGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGTGAGGTGCGCTCGAAGTTGAATGACACATTTGTCGAACTATTTGCTGAAGTTTTCTGCTGTTTACCTTTGGCTCATGTTATCAACGAGAAAATTTTTGTAGTTCATGGAGGTCTTTTTAGTGTTGATGGGGTCAAACTCTCTGACATTCGATCAATTAATCGATTTTGTGAGCCTCCTGAAGAAGGGTTGATGTGTGAATTGCTATGGAGTGATCCACAACCTCAGCCTGGAAGAGGCCCAAGCAAGCGTGGTGTAGGCCTTTCTTTTGGTGCAGATGTGACAAAAAGGTTTTTGCAGGAAAATAATTTAGATTTAGTTGTGCGGTCTCATGAAGTAAAGGACGAAGGTTATGAGATTGAACATGATGGTAAACTTATAACTGTGTTTTCTGCTCCAAATTACTGTGACCAGATGGGTAACAAAGGTGCCTTTATTCGATTTGAGGCACCCGATATGAAACCTAACATTGTCACATTCTCAGCTGTGCCACATCCTGACGTCAAGCCAATGGCCTATGCAAACAACTTCCTCCGGATGTTCCAATAA 1623 0.406 MESEKSNVSKAEELKLLANEAFNARKYAQAIDLYTQAIELNSQNAVYLANRAFAHLRLEEYGSAIQDATKAIEIDPKYSKGYYRRGAAHLGLGKFKEALKDFQQVKKMCPNDPDATKKLKECEKAVMKLKFEEAIAVPESQRRSVAESIDFHSIGKGRNSSVPTEVAIAAVTVAVMAAAVMLFRTSKTTIVVAIVVGLLLLLGAFWWTGHDTDVEPQYSGARIEGDVVTLDFVKKMMEDFKNQKCLHKRYAFQIVLQTREMLQALPSLVDINVPDGKHFTVCGDVHGQYYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLARGNHESKSMNKIYGFEGEVRSKLNDTFVELFAEVFCCLPLAHVINEKIFVVHGGLFSVDGVKLSDIRSINRFCEPPEEGLMCELLWSDPQPQPGRGPSKRGVGLSFGADVTKRFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDMKPNIVTFSAVPHPDVKPMAYANNFLRMFQ* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0102 540 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 210 539 - -
Apr2g0102 540 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 11 188 - -
Apr2g0102 540 PANTHER BNAC09G39960D PROTEIN 210 539 - -
Apr2g0102 540 PANTHER BNAC09G39960D PROTEIN 11 188 - -
Apr2g0102 540 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Apr2g0102 540 Pfam Tetratricopeptide repeat 80 112 IPR001440 GO:0005515
Apr2g0102 540 PIRSF PPPtase_5 1 540 - -
Apr2g0102 540 Pfam Calcineurin-like phosphoesterase 278 472 IPR004843 GO:0016787
Apr2g0102 540 SUPERFAMILY TPR-like 7 137 IPR011990 GO:0005515
Apr2g0102 540 Pfam Tetratricopeptide repeat 17 78 - -
Apr2g0102 540 SMART tpr_5 79 112 IPR019734 GO:0005515
Apr2g0102 540 SMART tpr_5 45 78 IPR019734 GO:0005515
Apr2g0102 540 SMART tpr_5 11 44 IPR019734 GO:0005515
Apr2g0102 540 Gene3D Tetratricopeptide repeat domain 2 159 IPR011990 GO:0005515
Apr2g0102 540 SMART pp2a_7 246 522 IPR006186 GO:0016787
Apr2g0102 540 CDD MPP_PP5_C 218 533 IPR041753 -
Apr2g0102 540 Gene3D - 207 539 IPR029052 -
Apr2g0102 540 SUPERFAMILY Metallo-dependent phosphatases 227 534 IPR029052 -
Apr2g0102 540 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Apr2g0102 540 PRINTS Serine/threonine phosphatase family signature 278 305 IPR006186 GO:0016787
Apr2g0102 540 PRINTS Serine/threonine phosphatase family signature 308 335 IPR006186 GO:0016787
Apr2g0102 540 PRINTS Serine/threonine phosphatase family signature 341 365 IPR006186 GO:0016787
Apr2g0102 540 PRINTS Serine/threonine phosphatase family signature 375 401 IPR006186 GO:0016787
Apr2g0102 540 PRINTS Serine/threonine phosphatase family signature 405 432 IPR006186 GO:0016787
Apr2g0102 540 PRINTS Serine/threonine phosphatase family signature 461 481 IPR006186 GO:0016787
Apr2g0102 540 PRINTS Serine/threonine phosphatase family signature 483 499 IPR006186 GO:0016787
Apr2g0102 540 Pfam PPP5 TPR repeat region 212 270 IPR013235 -
Apr2g0102 540 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0102 Apr-Chr2 1570229 1580003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0102 253 462 Calmodulin-binding Proteins AT5G63870 35.102 1.15e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0102 K04460 - gmx:100820099 1011.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0102 2 1570229 1580003 Apr2g0102 2 1570229 1580003 ECH