Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0096 ATGGAGCTTCCCAATAATCAAGCTCAAGAAGGATCTTCTCAGAAGAAAATGGGAAGAGGGAAGATTGAAATCAAACGGATCGAGAACACCACAAACAGGCAAGTCACCTTTTGCAAGCGCCGCAACGGGTTGCTGAAGAAAGCCTATGAATTATCAGTGTTGTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCAAGCCGTGGTCGTTTGTATGAGTATGCCAACAACAGTGTTAGAGCAACTATTGAAAGGTACAAAAAGGCATGTGCTGCTTCCTCAAATGCAGAATCTGTGTCTGAAGCTAATACACAGTTTTACCAGCAAGAATCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATTTAAACAGGCACATCCTTGGTGAAGCACTTGGTTCCCTGAGTCTTAAGGAGCTAAAGAACCTCGAGGGTAGGTTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAAACCTTGTTTGCTGATGTTGAGTTTATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAATAATTATCTGCGAGCTAAGATAGCTGAGCATGAGAGAGCTCAGCAACAGCAACAGAATATGATGTCAGGAACTCTGTGTGAGTCCCTTCCTTCACAACCATATGACCGCAATTTCTTTCCTGTAAATCTAATAGGTCCTGATCATCAATATTCACGTCAAGACCAAACTGCTCTCCAACTAGTGTAA 726 0.4187 MELPNNQAQEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATIERYKKACAASSNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQNMMSGTLCESLPSQPYDRNFFPVNLIGPDHQYSRQDQTALQLV* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0096 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Apr2g0096 241 Coils Coil 106 126 - -
Apr2g0096 241 Pfam K-box region 101 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr2g0096 241 CDD MADS_MEF2_like 18 94 IPR033896 GO:0000977|GO:0045944
Apr2g0096 241 Gene3D - 29 102 IPR036879 GO:0003677|GO:0046983
Apr2g0096 241 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Apr2g0096 241 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Apr2g0096 241 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Apr2g0096 241 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr2g0096 241 SUPERFAMILY SRF-like 18 92 IPR036879 GO:0003677|GO:0046983
Apr2g0096 241 Coils Coil 176 196 - -
Apr2g0096 241 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Apr2g0096 241 MobiDBLite consensus disorder prediction 1 21 - -
Apr2g0096 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 12 232 - -
Apr2g0096 241 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Apr2g0096 241 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Apr2g0096 241 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 12 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0096 Apr-Chr2 1494089 1501179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0096 8 241 MADS-box Gene Family AT3G58780 70.248 3.90e-120 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr2g0096 K-box 4.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0096 K09264 - gmx:100808734 431.409