LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr2g0088	ATGGACAAACATTCTGGGGATTCATTGTCTGGTCATGGTGCTGCAGGGATTTCCTTACTTAATATTCCAAAAAGGGTGGGAAGCAGTGCATGGGGAATACCGCATGCCACCGATATATTCCATGATTCAAGTGATGTTAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCACATGAAAAGTTAGATTTGACTGATTCTGAACATTATGGTCAACCAGTTGATGATAACATGCTAACATTAGATAAAGTTCATAAAGAGGATGATGAGGGACATGATCCTTTTGATGATTTCGAAACCAGTGCAATTGGAAACATGCTTCCTGATGATGAAGAGGAGCTTTTAGCTGGAATAATGGATGATTTTGACCTCAGTAAATTGCCCAGCCAATTGGAGGATTTGGATGAAAGTGATATGTTTGTCAATGGAGGGGGATTTGAGATGGATTTTGACCAAGAGAGCCTTAATATTGTTATGTCAAAGATAAACATTTCAGATGGAGTTGCTTCAAATGGTATTGGTCACTATGCAATCCCAAATGGCGTGGGAACAGTTGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAACAGTAATGTTGAGGACTCTGAATTACGAACACTATTTGAGCAATATGGGGATATCAGAACTTTGTATACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGACATTCGAGCTGCTCGCACAGCCATGCGTGCTTTACAAAACAAGCCCTTGAGAAGAAGAAAACTTGATATTCATTTTTCAATTCCTAAGGACAATCCCTCAGAAAAAGATATTAACCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCAGTGTCAAATGACGATCTGCGTCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCTCATAAGAGACACCACAAGTTTATTGAATTTTATGATGTGAGAGCAGCAGAGGCAGCACTTAAAGCATTAAATCGAAGTGATATTGCTGGGAAACGCATAAAACTTGAACCTAGCCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTGAGTCAAGAACTGGAACAAGATGAAGCTCGAACTTTTAGGCATCAAGTAGATTCACCTGTGGCCAACTCCCCTCCTGGTAGCTGGGCACAATTTGGTAGTCCAGTTGAACATAATCCATTAGGTTCCTTTAGCAAGTCCCCTGGTTTGGGTCATACCAGCCCTATGAATACTTCCCATTCCAACCATTTGCCTGGATTGGCTGCAATTCTTTCCCCACATGCATCAACATCTGCCAAGATTGCACCAATTGGCAAGGACCCTGGAAGGTCTGCAAATCAGATGTTTGCAAACTCTGGATCAACACAAGGAGCAGCTTTTCAGCATTCTGTGTCCTTTCCTGAGCAAAAAGTAAATGCAAGTCCTCGGCCTATATCAACTTTTGGTGAATCAAGTTCAAGTGCATCTAGTATTGGGACACTATCTGGTCCTCAATTTCTTTGGGGAAGCCCAACTCCTTATTCAGACCATTCAAACACATCTGCCTGGTCATCGTCTTCTGTGGGGCTTCCATTTACATCTAGTGGCCAAAGGCAGGGTTTCCCATATACTAGTCATCACAGTACTTTTCTTGGCTCCCAGTCCCATCATCATGTAGGATCTGCTCCATCTGGCCTTCCTCTTGATAGGCATTTTAGCTACTTTCCGGAGTCACCTGAAGCTTCTCTCATGAACCCGGTTGCATTTGGAAACTTGAATAACAGTGACAGGAGTTTTATGGTGAACATGGGTAATCGTGCTTCTTTAGGAGTTGGCATTGGTCTTTCAGGAAATACTACTGAAATTAGTTCACCTAATTTCAGAATGATGTCACTGCCTAGGCATGGTTCCTTGTTCCCAGGAAATGCTTCTTACTCTGGACCAGGAGCAATTAATATGGAGGGTTTAGCTGAACGGGGACGCAGTAGGCGACCGGACAATAGTGGGAACCAAATTGATAGTAAGAAGCTGTACCAGCTTGATCTAGACAAAATCATTAGTGGTGAAGATACAAGGACTACTTTGATGATTAAGAATATTCCTAACAAGTACACTTCAAAAATGCTGCTTGCTGCAATTGATGAGAATCACCGGGGTACTTATGACTTTCTCTACTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTCATCAACATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCACTTAATGGGAAGAAATGGGAAAAGTTTAATAGCGAAAAAGTTGCTTCACTGGCATATGCACGGATACAAGGAAAGGCTGCTCTTGTGATGCATTTTCAGAATTCAAGCTTAATGAATGAAGACAAGCGGTGCCGGCCAATTCTCTTTCATTCAGAGGGCCAAGATACTGGTGACCAGGAACACTTGCTATCGAGCAATTTGAATATATGCATTCGTCAGCCTGATGGATCGTATTCAGGTGATTTGTTGGAGAGCCCGAAGGGCAATTTGGATGAGAAGCTAGAGAAAGATTAA	2571	0.4228	MDKHSGDSLSGHGAAGISLLNIPKRVGSSAWGIPHATDIFHDSSDVSLFSSSLPVLPHEKLDLTDSEHYGQPVDDNMLTLDKVHKEDDEGHDPFDDFETSAIGNMLPDDEEELLAGIMDDFDLSKLPSQLEDLDESDMFVNGGGFEMDFDQESLNIVMSKINISDGVASNGIGHYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVDSPVANSPPGSWAQFGSPVEHNPLGSFSKSPGLGHTSPMNTSHSNHLPGLAAILSPHASTSAKIAPIGKDPGRSANQMFANSGSTQGAAFQHSVSFPEQKVNASPRPISTFGESSSSASSIGTLSGPQFLWGSPTPYSDHSNTSAWSSSSVGLPFTSSGQRQGFPYTSHHSTFLGSQSHHHVGSAPSGLPLDRHFSYFPESPEASLMNPVAFGNLNNSDRSFMVNMGNRASLGVGIGLSGNTTEISSPNFRMMSLPRHGSLFPGNASYSGPGAINMEGLAERGRSRRPDNSGNQIDSKKLYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKALNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTGDQEHLLSSNLNICIRQPDGSYSGDLLESPKGNLDEKLEKD*	857

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr2g0088	856	SMART	rrm1_1	698	774	IPR000504	GO:0003723
	Apr2g0088	856	SMART	rrm1_1	197	265	IPR000504	GO:0003723
	Apr2g0088	856	SMART	rrm1_1	282	350	IPR000504	GO:0003723
	Apr2g0088	856	MobiDBLite	consensus disorder prediction	456	500	-	-
	Apr2g0088	856	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	283	348	IPR000504	GO:0003723
	Apr2g0088	856	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	198	262	IPR000504	GO:0003723
	Apr2g0088	856	CDD	RRM1_MEI2_like	195	271	IPR034453	-
	Apr2g0088	856	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	12	853	-	-
	Apr2g0088	856	SUPERFAMILY	RNA-binding domain, RBD	698	783	IPR035979	GO:0003676
	Apr2g0088	856	Gene3D	-	185	279	IPR012677	-
	Apr2g0088	856	Gene3D	-	280	378	IPR012677	-
	Apr2g0088	856	MobiDBLite	consensus disorder prediction	443	500	-	-
	Apr2g0088	856	Pfam	RNA recognition motif 2	696	792	IPR007201	-
	Apr2g0088	856	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	281	354	IPR000504	GO:0003723
	Apr2g0088	856	PANTHER	PROTEIN MEI2-LIKE 2	12	853	-	-
	Apr2g0088	856	CDD	RRM3_MEI2_like	699	784	IPR034454	-
	Apr2g0088	856	SUPERFAMILY	RNA-binding domain, RBD	193	356	IPR035979	GO:0003676
	Apr2g0088	856	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	196	269	IPR000504	GO:0003723
	Apr2g0088	856	CDD	RRM2_MEI2_like	280	350	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr2g0088	Apr-Chr2	1379574	1388470	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr2g0088	191	507	Eukaryotic Initiation Factors Gene Family	AT3G16380	24.217	1.47e-11	65.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr2g0088	-		-	gmx:100812324	1553.11