Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0073 ATGGTTATGAAGGTTTCTCTCATTTGGGTTCTCCTGGTGTTACACTTCTATTCTTGCACAGTTGAAGCCATTTTTAGGCTTCACAATCACAATGGTCTAAATGAAAGTGGATCTTCTCTTGCTGCAATCAAGATACATGATCATGCAAGCTTCAATGCTGTTTCTTCTTCAACTGGGTGTAGCTTCTCGAAGTCTGAGGAATTTGAGCATTCAGGAACCATAGCATCAGGTGAAGATACTGAGGATGATGATGATGATGGTGAAGAGAGGGAAGCTTTTCTAGCAGCAAAACATCCAAACCAATATGTGAAACTCCATTTGAAGCACCACTCAGTGAGCAATGATGCTGAGCCCAAGAAATCTGTGGCTGATTCTACAGTTAGAGACTTGACAAGAATTCAGACCCTTCACAGAAGGGTCATAGAAAAGAAGAACCAAAACACAATTTCAAGGCTTCAGAAAGCACAAGAGCAATCAAAGAAGTCCTATGAGCCAGTGGCTGTTCCTGCAGCTCCACCAGAATATTTCTCAGGTGACTATTCTGGTCAACTTGTGGCAACCTTGGAGTCAGGGGTGAGTCTTGGCTCTGGTGAGTACTTCATGGATGTGTTTGTTGGAACACCTCCTAAACATTTTTCTCTAATACTTGACACAGGTAGTGACCTTAACTGGATTCAATGCGTTCCTTGCTATGCTTGTTTTGAGCAAAATGGACCATACTATGATCCTACAGATTCTAGTTCTTTTAAGAATATAACCTGTCATGATCCAAGGTGTAAATTGGTGTCATCCCCTGACCCTCCTCATCCTTGCAAGCTTGAGAATCAGAGTTGTCCATATTTCTATTGGTATGGTGATAGTTCCAACACAACTGGTGATTTTGCACTTGAAACTTTCACTGTGAATCTCACCACACCTAAAGGGAAGCCTGAGCTCAAGCTTGTTGAGAATGTTATGTTTGGTTGTGGTCATTGGAATAGAGGCCTTTTTCATGGGGCTGCTGGATTGTTAGGCTTAGGGAGAGGGCCATTGTCATTTGCTTCTCAACTTCAATCTCTTTATGGTCATTCATTTTCCTATTGTCTTGTGGATAGAAATAGCAATTCAAGTGTTAGTAGCAAGTTGATATTCGGTGAGGACAAGGAGCTGCTGAGCCACCCCAATTTGAACTTCACTTCTTTTGTTGGTGGAAGAGAGAACCCCGTTGACACATTTTACTATGTCCAAATCAAATCTATAATGGTTGGTGGTGAGGTACTAAAGATACCAAAGGAAACTTGGCATTTGTCATCAGAAGGTGCTGGGGGCACAATCATTGATTCTGGCACCACTCTAACTTATTTTGCTGAACCTGCTTATGATATTATCAAGGAAGCATTCATGAAGAAAATCAAAGGGTATCCACTTGTTGAAACCTTTCCTCCTCTAAAGCCATGCTATAATGTGTCAGGAGTTGAAAAAATGGAGCTACCTGAATTTGGGATCTTGTTTGAAGACGGAGCAGTGTGGGATTTCCCTGTGGAAAATTACTTTATTCAAATAGAACCGGAAGATATTGTATGTTTGGCTATTTTGGGGACTCCTAGGTCTGCACTTTCAATAATTGGAAACTACCAGCAGCAAAATTTTCACATCTTGTATGATATGAAGAAATCTAGACTTGGGTATGCACCAATGAAATGTGATGATATTTAA 1695 0.4088 MVMKVSLIWVLLVLHFYSCTVEAIFRLHNHNGLNESGSSLAAIKIHDHASFNAVSSSTGCSFSKSEEFEHSGTIASGEDTEDDDDDGEEREAFLAAKHPNQYVKLHLKHHSVSNDAEPKKSVADSTVRDLTRIQTLHRRVIEKKNQNTISRLQKAQEQSKKSYEPVAVPAAPPEYFSGDYSGQLVATLESGVSLGSGEYFMDVFVGTPPKHFSLILDTGSDLNWIQCVPCYACFEQNGPYYDPTDSSSFKNITCHDPRCKLVSSPDPPHPCKLENQSCPYFYWYGDSSNTTGDFALETFTVNLTTPKGKPELKLVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFASQLQSLYGHSFSYCLVDRNSNSSVSSKLIFGEDKELLSHPNLNFTSFVGGRENPVDTFYYVQIKSIMVGGEVLKIPKETWHLSSEGAGGTIIDSGTTLTYFAEPAYDIIKEAFMKKIKGYPLVETFPPLKPCYNVSGVEKMELPEFGILFEDGAVWDFPVENYFIQIEPEDIVCLAILGTPRSALSIIGNYQQQNFHILYDMKKSRLGYAPMKCDDI* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0073 564 Pfam Xylanase inhibitor C-terminal 406 557 IPR032799 -
Apr2g0073 564 Gene3D Acid Proteases 181 379 IPR021109 -
Apr2g0073 564 Pfam Xylanase inhibitor N-terminal 199 378 IPR032861 -
Apr2g0073 564 Coils Coil 138 158 - -
Apr2g0073 564 MobiDBLite consensus disorder prediction 69 88 - -
Apr2g0073 564 PRINTS Pepsin (A1) aspartic protease family signature 205 225 IPR001461 GO:0004190|GO:0006508
Apr2g0073 564 PRINTS Pepsin (A1) aspartic protease family signature 437 448 IPR001461 GO:0004190|GO:0006508
Apr2g0073 564 PRINTS Pepsin (A1) aspartic protease family signature 533 548 IPR001461 GO:0004190|GO:0006508
Apr2g0073 564 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 87 562 - -
Apr2g0073 564 CDD pepsin_A_like_plant 198 561 IPR034161 -
Apr2g0073 564 Gene3D Acid Proteases 380 564 IPR021109 -
Apr2g0073 564 ProSiteProfiles Peptidase family A1 domain profile. 199 557 IPR033121 -
Apr2g0073 564 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 214 225 IPR001969 GO:0004190|GO:0006508
Apr2g0073 564 PANTHER ASPARTYL PROTEASES 87 562 IPR001461 GO:0004190|GO:0006508
Apr2g0073 564 SUPERFAMILY Acid proteases 191 562 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0073 Apr-Chr2 1126521 1129006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0073 197 564 Miscellaneous Gene Families AT1G77480 29.949 2.80e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0073 K22683 - gmx:100818203 973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0073 2 1126521 1129006 Apr2g0073 2 1126521 1129006 ECH
Apr2g0073 2 1126521 1129006 Apr9g1672 9 26011762 26017876 PCT