Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0071 ATGGATGTGGCTAAGGTAAAGGTACATCATCAACATGGCTCTGCGGATAACAAGGATGAAGAAGTTGTGCTTCCTGGGTTTAGATTCCACCCCACAGATGAAGAGCTTGTCGGGTTTTATCTTCAAAGAAAGGTGGAAAAGAAACCTCTTCGAATTGAACTCATCAAACAGGTTGATATCTACAAATATGATCCATGGGATCTTCCAAAAGTGAATTCCTTTGGGGACAAAGAGTGGTATTTTTTTTGCATAAGGGGGAGAAAGTACAGGAACAGTGTAAGGCCAAACAGGGTAACAAGGTCTGGGTTCTGGAAAGCCACAGGAATTGACAAGTCCATATATTGTGTGAAAGAACCACATGAATGCATTGGCCTCAAGAAGTCTTTGGTTTACTACCGTGGAAGTGCTGGGAAAGGCACCAAAACTGACTGGATGATGCATGAGTTTCGCCTTCCACCCAATGCAAATTCCAACAACAATAATCCACTTCCTAATGCTACCAATGACCTTCAAGAAGCTGAGGTGTGGACACTATGCAGGATATTCAAACGCACCCCATCCTACAAAAAGTACACTCCAAATTTGAAAGATTCTACACCAGTCACCAAACCAAACCCATGCACCTTAGATTCTGACAATTGCAAGCCATATTTGATTTGTAGAGACCCATTAGTGATGCAACAAATTGAAAGGAAACCGGTTATTGGACAGGTTGATGACAATAATAAACACTTATTTTTAGGTCAGTTTGGTTCAGTACCTCATCATCAGGCTCCATCAAATATGCCTTACCCCAGTTTGTGGAATCAGAATGTTGAAGATTATGCATTTGCCAATGAGAATTGGGATGAGCTAAGATCTGTGGTTCAGTTTGCTATTGATCCATCCACAGTCTTTGATTGTACAGAAACATATGTACCACCCTACTTTTCTTAG 936 0.4113 MDVAKVKVHHQHGSADNKDEEVVLPGFRFHPTDEELVGFYLQRKVEKKPLRIELIKQVDIYKYDPWDLPKVNSFGDKEWYFFCIRGRKYRNSVRPNRVTRSGFWKATGIDKSIYCVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNANSNNNNPLPNATNDLQEAEVWTLCRIFKRTPSYKKYTPNLKDSTPVTKPNPCTLDSDNCKPYLICRDPLVMQQIERKPVIGQVDDNNKHLFLGQFGSVPHHQAPSNMPYPSLWNQNVEDYAFANENWDELRSVVQFAIDPSTVFDCTETYVPPYFS* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0071 311 Pfam No apical meristem (NAM) protein 25 151 IPR003441 GO:0003677|GO:0006355
Apr2g0071 311 PANTHER - 6 303 - -
Apr2g0071 311 SUPERFAMILY NAC domain 17 183 IPR036093 GO:0003677|GO:0006355
Apr2g0071 311 Gene3D NAC domain 32 189 IPR036093 GO:0003677|GO:0006355
Apr2g0071 311 ProSiteProfiles NAC domain profile. 23 184 IPR003441 GO:0003677|GO:0006355
Apr2g0071 311 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0071 Apr-Chr2 1082243 1087023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0071 20 185 NAC Transcription Factor Family AT5G39820 62.222 2.31e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr2g0071 NAM 1.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0071 - - gmx:100819795 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0071 2 1082243 1087023 Apr2g0071 2 1082243 1087023 ECH
Apr2g0071 2 1082243 1087023 Apr9g1667 9 25972858 25975959 PCT