Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0049 ATGTCGGGTCGAGGAGGAAGGGACCGGTTTAGGAGGGATTACCCTTCAAGGTACGAAGATAGTAGGGGAAATGGGGTTAGCGGGCGTGACAACCGCAGTGGCAACAGCAACAATAACAATCCACCTTCCAGGCACCTTTGGGTTGGGAATCTATCCCACAGCATTATAGAGGATGAACTTGCTCATCATTTCTTACGGTTTGGACCATTGGAGAATGTGGCATTCCAGCCTGGCCGCAGCTATGCTTTCATTAACTTCAAAAGGGATGAAGATGCTATTGATGCCATGAGAGCACTGCAAGGGTTTCCTCTTGCTGGCAACCCACTTAGAATTGAGTTTGCAAAGGCGGATAAGCCATCAACAATTCCACGTGATGAAGATTACTCGTGGGATGAGCGGAACTCAACATTAAGGGGATCTCCTTTCTCTCAAAGAGAGTTTAGAGGACGCCATGGTAGCCCTGAACCACATTACTCTGATAAATCCAAGCCGAGTGATAAAAATCCAGATCCCAGTGAAGTTTTGTGGATTGGGTTCCCAGCTCAGTTGAAGGTGGATGAGTCAATTTTAAGAAAGGCTTTTTCTCCATTTGGTGAGATAGTGAAGATTACTACATTTCCAGGTCGGAGTTATGCCTTTGTTCGTTTTAGGAGTCTGACGTCTGCGTGCAGAGCAAAAGATAATCTGAAGGGAAAGTTATTTGGGAATCCCCGTGTACATATTTGTTTTGCCAAGAGTGAAACAGGTTCATCAAGCAACGGCAGGAGCTCATTTAATATTCCTCGTTCCCCAATTTACAAGTCAAGTGTTCGCGATGGATCTTCTGAGAATCTCAGGCAGGATAGGAGCTTCAATGTAGATCGCAACATTAGTTCTCCAAACCATTTCCCAAATTGGGATTCTGATGCTTATGATCTTAACAAAAGAGGTTCTTCATGGGCTGGTGGGACTAACTCATATGAGCAAAGGAAAGTTGGAGAGAAGGGGAGAACACTAGGAGTATCACAAGAAATCTATGAGGATATAAATAGTCCATCTAGAGAAAGACATGCTCATGTGGGTGATTTCCCACACAGATTTCCTCAAAAGGGTGCATTCTTTGATGATCTGCGTGCCTTGCCTGATGTTCCCTATCTACGTGAGGCTAAAAAGCTAAGGACTGCTTCTCCTCCTCCTGAAAGAGAGCTTCCGGAGTATCCTTTCTCTGAGTTAGAAAGGCAGAAACGTGTTTTCCCAAGATTATTATCTGATTTTCCCCAACATGAGCCTTTTGATAAAAGCTTTGATGCTGGAAATTTTACGTATGGACAGACGCTTGATCACCCTCCAAATTCACCTCTGCCTCGTTTAGATAGACATGAAGGTTGGAAACCATATGATAGTTTCGAAATGGGTCCTGGTGCTCTGCAATCAACTTTTGTTGAGAAGAAGCGACTCACACCTCAACCTGATAGTTCATCTTTAAGTGAGTGGAAATGGGAAGGAACCATTGCCAAAGGTGGAACCCCTGTTTGTCGTGCACGCTGCTTCCCTGTGGGGAAAGTCCTAGACATGATGTTACCTGAATTCTTGGATTGCACTGCAAGAACTGGTCTAGACATGCTTTCAAAGCATTACTACCAAGCAGTTGGTGTTTGGGTTGTTTTCTTTGTGCCTGGAAGTGATGCTGACATTGAATTGTACAATGAATTTATGCATTATCTTGAGGAAAAGCAGCGCGCAGCAGTTGCCAAGTTGGATGACAAAACCACCTTATTTCTTGTACCTCCATCAGAGTTCTCAGAGAAAGTACTGAAGGTACCTGGTAAATTGAGTATATCTGGTGTTATTCTGAGGTTGGAGAATCCTGGTTTAAATCATGGTCCAGTACACGTTCAAGAAGAAATGACAAATGAAAACCTGGTGTCCTATAATGAGAATATACTGCATTCAAAGTCATCATTTCCGTCAGCACGTGTACCTACATCTCCGTCTATTTCAGAATTGGGTAGTTCTGGAACCAGCAATCTTTCATTTATCGGAAATAAATTTGCAGCAGCTTCTGATTCAGCTCGTGCCATGGTTATTAACATGTCTGAGTCTCATGATGAAAGAGGTCGTGACTATCCTCCTATCCAGCAACGGATGTCTGGACCAAATTGGTCTTCGCATAATCTGCAGAACTTAATCTCTAGTAGAACTTTATCATTGCAATCATCAAGTGGTGCCGTTGAACCTCTTGCCGAAGAACGCCAACCCATCATTCCAAGGGTAGTGCCAGATGTAAACTCAATTCAACATTCCAGTGGAATCTCTGGTATTCCATTTTATGGTAACAGCAAGTCATCTTACCCTGATATAAGACATTTAGATCCTTTATCAGTGCCTGTGGGAGCCCTTCAACCCGAACAGCTTGCGCAATTAGCTGCAACTCTTCTTGAGCAGCAGAGGCAATCAGGAAGCTCTCTAAGTGCATCTGCATCAGGTGATCCTAGGCAGATTAACAGATTTAATGTGTCGGACACCTCATCCAGACCATCCCAGAAATATGCTACCGAAAACAATCTGGTGAATTCTGATCTCTCAACATCTCAGTTTGGTCAAGTTCTACAATTACAAAAGCAACAGCAGATGTCAAATGTACCTCCTCTGCCACAGATGGTTCAAAGGGAACCTCAAAGAGAGGCTAATGGAAATCAGCAGTTGACAGATAGTAACTTGCAGGAAGATGCTGATGCAGATCCACAGAAACGTCTGCAAGCAACACTACAGCTTGCTGCTGTTCTTCTTCAGCAAATCCAGCAAGGAAAAGGAAGTTGA 2799 0.4369 MSGRGGRDRFRRDYPSRYEDSRGNGVSGRDNRSGNSNNNNPPSRHLWVGNLSHSIIEDELAHHFLRFGPLENVAFQPGRSYAFINFKRDEDAIDAMRALQGFPLAGNPLRIEFAKADKPSTIPRDEDYSWDERNSTLRGSPFSQREFRGRHGSPEPHYSDKSKPSDKNPDPSEVLWIGFPAQLKVDESILRKAFSPFGEIVKITTFPGRSYAFVRFRSLTSACRAKDNLKGKLFGNPRVHICFAKSETGSSSNGRSSFNIPRSPIYKSSVRDGSSENLRQDRSFNVDRNISSPNHFPNWDSDAYDLNKRGSSWAGGTNSYEQRKVGEKGRTLGVSQEIYEDINSPSRERHAHVGDFPHRFPQKGAFFDDLRALPDVPYLREAKKLRTASPPPERELPEYPFSELERQKRVFPRLLSDFPQHEPFDKSFDAGNFTYGQTLDHPPNSPLPRLDRHEGWKPYDSFEMGPGALQSTFVEKKRLTPQPDSSSLSEWKWEGTIAKGGTPVCRARCFPVGKVLDMMLPEFLDCTARTGLDMLSKHYYQAVGVWVVFFVPGSDADIELYNEFMHYLEEKQRAAVAKLDDKTTLFLVPPSEFSEKVLKVPGKLSISGVILRLENPGLNHGPVHVQEEMTNENLVSYNENILHSKSSFPSARVPTSPSISELGSSGTSNLSFIGNKFAAASDSARAMVINMSESHDERGRDYPPIQQRMSGPNWSSHNLQNLISSRTLSLQSSSGAVEPLAEERQPIIPRVVPDVNSIQHSSGISGIPFYGNSKSSYPDIRHLDPLSVPVGALQPEQLAQLAATLLEQQRQSGSSLSASASGDPRQINRFNVSDTSSRPSQKYATENNLVNSDLSTSQFGQVLQLQKQQQMSNVPPLPQMVQREPQREANGNQQLTDSNLQEDADADPQKRLQATLQLAAVLLQQIQQGKGS* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0049 932 MobiDBLite consensus disorder prediction 27 45 - -
Apr2g0049 932 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 238 IPR000504 GO:0003723
Apr2g0049 932 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 109 IPR000504 GO:0003723
Apr2g0049 932 CDD RRM3_Spen 46 115 - -
Apr2g0049 932 SMART rrm1_1 45 112 IPR000504 GO:0003723
Apr2g0049 932 SMART rrm1_1 174 242 IPR000504 GO:0003723
Apr2g0049 932 Gene3D - 159 255 IPR012677 -
Apr2g0049 932 SUPERFAMILY RNA-binding domain, RBD 30 124 IPR035979 GO:0003676
Apr2g0049 932 Pfam SPOC domain 487 601 IPR012921 -
Apr2g0049 932 MobiDBLite consensus disorder prediction 144 168 - -
Apr2g0049 932 MobiDBLite consensus disorder prediction 1 45 - -
Apr2g0049 932 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 116 IPR000504 GO:0003723
Apr2g0049 932 MobiDBLite consensus disorder prediction 1 26 - -
Apr2g0049 932 MobiDBLite consensus disorder prediction 884 909 - -
Apr2g0049 932 Gene3D - 26 121 IPR012677 -
Apr2g0049 932 PANTHER RNA RECOGNITION MOTIF-CONTAINING 16 921 - -
Apr2g0049 932 SUPERFAMILY RNA-binding domain, RBD 139 259 IPR035979 GO:0003676
Apr2g0049 932 MobiDBLite consensus disorder prediction 116 171 - -
Apr2g0049 932 MobiDBLite consensus disorder prediction 117 133 - -
Apr2g0049 932 MobiDBLite consensus disorder prediction 812 842 - -
Apr2g0049 932 PANTHER RNA-BINDING PROTEIN SPENITO 16 921 - -
Apr2g0049 932 MobiDBLite consensus disorder prediction 884 902 - -
Apr2g0049 932 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 246 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0049 Apr-Chr2 787817 814841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0049 29 264 Eukaryotic Initiation Factors Gene Family AT1G22760 25.703 7.28e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0049 - - gmx:100811668 1438.71