Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0048 ATGGGTTTTCAAAGGCCACTTTCACTCATTTCCCTCTTTGTTACGCTAACCTTCACATATCAAGCCACTGCACAGCTAAAATTCATAGATAGTTGTAACAATTGGATGGGAAACTACACAGCTAGAAGCACCTACAAGAACAACCTCAATGCCCTTCTCATCAATCTCACTTCCAACACAAACATTGACTATGGCTTCTTCAATTTTTCTTATGGCAAAAGTCCTGACATAGTGAATGCAATTGGTCTCTGCAGAGGAGATGTTAGCCCACAAGAGTGCCTTAATTGTCTCAATGATTCAAGAGTTCAGCTCACAAGAAAGTGCCCAAATCAAAAAGAGGCAATTGGTTTTGGTCTTGCATGCATGCTTCGTTACTCTAGCCATTCAATATTTCACATTATGGACCCTCAAATTGAATACTATGAGTGGACTGGAATCAATGCAACAAAGGTTGAGCAGTTCAATGGGGTACTCATGAATTTGCTGAATGGTCTAAGAAGCAAAGCTGCATCTGGTGACTCCCTTCACAAGTTTGCTGCAGGAAATGTCACAGGACCAAGTTTTCAAAATATATATGCTCTTGTGCAGTGCACACCTGATCTGGTTGAGCAAGATTGTAATGATTGTTTGTTTGGGGCATTCTCAGAAATCACAAAATGTTGCAGTGGCAATAGAGCGGTAAGAATTGGAAGGCGTAGTTGTAATGTTAGATTTGACACCAATCGCTTCTATGGACCTATAAATGACACAACACCTTCTCCTCATGTGCAACCTAACTATAACACACCAACTAAAGGACACAGCTACACATTAAGGACTGTCATCATCATAGTTGTTGCAGCTGCTTCCCTTGTCACACTATTCGTCTTTATTTGTATATATTTTGCATTAAAGGGTCCAAGGAAATATAGTGAAGGTGAAACAGAAGCAAATGTTGAAATTAAAATTGAGGAGCCACTGCAATTTGATTTTGACACCATAGAAGTAGCTACAGATAGCTTCTCTGATGCAAATAAGCTTGGTGAAGGCGGATTTGGACCTGTTTACAAGGGTATGCTCTTCAATGGACAAGAGATTGCTGTCAAAAGGTTATCAAAAGCTTCTAATCAAGGAGATATTCAGTTTAAGAATGAAGTCATGTTGGTAGCCAGGCTTCAACACCGAAATCTTGTTAAGCTACTTGGTTTTTGCTTGGAGAAAAGTGAGAGACTACTTGTTTATGAGTTTCTTCCCAATAAAAGCCTCAATTACTTCATATTTGATCCAACCAACCACAAACTCTTGAATTGGGAAAGGCGCTACAAAATTATAGAAGGCATTGCTCGAGGTCTTCTTTACCTTCATGAGGATTCTCGACTGCGAATTGTTCATCGTGATCTCAAGTTAAGCAATATTCTCCTAGATCAAGAGATGAATTCAAAGATATCTGATTTTGGCACAGCAAGATTGTTATGTGAGGATCAAACTCAAAGTGATACAAGTCAAATTGTGGGAACCTATGGATATATGGCACCAGAGTATGTGAATTATGGACATTTCTCTATGAAGTCTGATATCTTTAGTTTTGGTGTGATGGTTTTAGAGATTGTAAGTGGCAGGAAAAATGTGCTAAGCTTTGCATGGAAAAATTGGAGGGCAGATACAATTACTAAGATTATTGATCCCTCAATAAATGATGTTTCAAGAGATGAAATAATGAGATGCATCCACATTGGATTACTATGTGTTCAGGAAGATGTGGCTGACAGACCCACAATGGCTTCAATTGTACTTATGCTCAACAGCTATTCTACCACTCTTCCAGTACCTTTGCTCCCCACATTTTATATTAGTGGAACAAGTTTATCAGATAAAGATTCAAGTGAGAATAATTCAGGGTCAACAACAACTGGTGAATCCAGAAGTAACATCAACCAAGTGTCAGCAAATGAAGCTTCCATTACTGAGCTATCACCTCGCTAA 1962 0.3889 MGFQRPLSLISLFVTLTFTYQATAQLKFIDSCNNWMGNYTARSTYKNNLNALLINLTSNTNIDYGFFNFSYGKSPDIVNAIGLCRGDVSPQECLNCLNDSRVQLTRKCPNQKEAIGFGLACMLRYSSHSIFHIMDPQIEYYEWTGINATKVEQFNGVLMNLLNGLRSKAASGDSLHKFAAGNVTGPSFQNIYALVQCTPDLVEQDCNDCLFGAFSEITKCCSGNRAVRIGRRSCNVRFDTNRFYGPINDTTPSPHVQPNYNTPTKGHSYTLRTVIIIVVAAASLVTLFVFICIYFALKGPRKYSEGETEANVEIKIEEPLQFDFDTIEVATDSFSDANKLGEGGFGPVYKGMLFNGQEIAVKRLSKASNQGDIQFKNEVMLVARLQHRNLVKLLGFCLEKSERLLVYEFLPNKSLNYFIFDPTNHKLLNWERRYKIIEGIARGLLYLHEDSRLRIVHRDLKLSNILLDQEMNSKISDFGTARLLCEDQTQSDTSQIVGTYGYMAPEYVNYGHFSMKSDIFSFGVMVLEIVSGRKNVLSFAWKNWRADTITKIIDPSINDVSRDEIMRCIHIGLLCVQEDVADRPTMASIVLMLNSYSTTLPVPLLPTFYISGTSLSDKDSSENNSGSTTTGESRSNINQVSANEASITELSPR* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0048 653 ProSiteProfiles Gnk2-homologous domain profile. 136 243 IPR002902 -
Apr2g0048 653 SUPERFAMILY Protein kinase-like (PK-like) 322 619 IPR011009 -
Apr2g0048 653 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 630 - -
Apr2g0048 653 Pfam Protein kinase domain 335 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0048 653 ProSiteProfiles Gnk2-homologous domain profile. 27 130 IPR002902 -
Apr2g0048 653 SMART serkin_6 334 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0048 653 ProSiteProfiles Protein kinase domain profile. 334 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0048 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Apr2g0048 653 Gene3D Transferase(Phosphotransferase) domain 1 410 600 - -
Apr2g0048 653 Gene3D Phosphorylase Kinase; domain 1 299 409 - -
Apr2g0048 653 Pfam Salt stress response/antifungal 32 127 IPR002902 -
Apr2g0048 653 Pfam Salt stress response/antifungal 148 240 IPR002902 -
Apr2g0048 653 MobiDBLite consensus disorder prediction 615 653 - -
Apr2g0048 653 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 630 - -
Apr2g0048 653 CDD STKc_IRAK 340 594 - -
Apr2g0048 653 Gene3D - 137 243 IPR038408 -
Apr2g0048 653 Gene3D - 26 129 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0048 Apr-Chr2 781776 785761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0048 37 653 Receptor kinase-like Gene Family AT4G21410 46.636 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr2g0048 Pkinase 2.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0048 - - aprc:113854156 1303.12