Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0030 ATGAGTGGCATGACAAGTAGGGGTGATTCTCGAAAATGTTTGAGGGGTCGCCGATCATCATCAATGGGTGATGAAGCTGGTGGTGAAGGTAGCTCGGGAGGAGAAGGTCCTCTAAAGAAAGGTCCATGGACAGCAGCAGAGGATGCAATTTTGGTAGAATATGTCAAAAAGTACGGTGAGGGCAATTGGAATGCAGTCCTGACAAAGTCAGGACTTGCCCGTTGTGGGAAAAGCTGCCGTCTACGATGGGCAAATCATTTAAGACCAGATCTAAAAAAGGGTGCATTTACATCTGAGGAAGAGAGAAAAATCATTGAGCTCCATGCTAAGATGGGAAACAAATGGGCTCGAATGGCTGCAGAGTTGCCTGGACGTACAGATAATGAAATCAAGAATTATTGGAATACAAGAGTTAAAAGAATGCAAAGGGCTGGCTTACCAATCTACCCTGATGAATTATGCCAACAGTTGCTTAATGGCAATGAAGAAAGTCAAAATGTTGGCAACTTGACAAATGATGCAACCCAACACAATGATTTTTCGCAAATTGACAATTTTGATATACCTGATGTGGATTTCAAAACTTTCAATTTCTGCCCGGGTCTATCAAATGGGCCATCAATTTTTGATATGCTTGACAGCAGCTTGTTTGAACAAAGTTCAGGCTCACCTCATAATTATAACATGTTCCCGCCAATGCATTCCTCAAAGCGCCTTCGAGAGTCAGATATGCTATACACTAGTTCTGGAAGTTGTATAGGTAATACTGTCCCGGTATTCAATCAGTATGGCAATTACCCTTGTGAGAACATTCCTGACCATCCTACATTGTCTTCTCCATATGATCCTCTTCTTGACACTAGTGATCAGTTTTATGATGGTAACCTTACTGGCAGCCATGCCTCATTAAATGGCAACATTACCTCTTCTTCTGCGCCCATATATGGGGCAATGAAGTTGGAGCTCCCTTCACTCCAATATGCAGAAACTCAACATGGTAGCTGGGGCAGGCCTACATCCTCACTTCCTTCACTTGAGTCTGTTGATACATTGATTCAGTCAACTCCGATTGAGCCTATTCAATCAGAAGCTGTTTATCCACAGAGCAGTGGCTTGCTAGAAGCAATAGTCTACAATTCAAAGAGTTCAAAAGGCTCAAACAATGATTCTTTGCAAGAGACAACCAATATGCCCAACGAAGCAGTCAAGACAGAATGGGATGAACAAGGGGAGCCATATTCCCTTGCTCAATCTGCTGCTTTAGTTATGACAGACTATACTCCTATGAGCATGTGCTCCGTGGATGGGGCACTAGCTGAAATCACTCAGGATCATGATATCAAGCATGAAACAGTTTCACAGCTCCCTGATTACAATTCCAGGAAAGAAGAAATTTTGAATCAGATAGATTTTACACAGTCAGATGCTTTATTTGACCTAGGTTGGTTTGGGGATAACATTGAGCATGGCAATGATCAATCTGTTATAAAAGGTGCTTTTCTAAATGCACTTCTTGGTGATGATTTTCAGGGTAAGCAATAA 1542 0.4209 MSGMTSRGDSRKCLRGRRSSSMGDEAGGEGSSGGEGPLKKGPWTAAEDAILVEYVKKYGEGNWNAVLTKSGLARCGKSCRLRWANHLRPDLKKGAFTSEEERKIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRVKRMQRAGLPIYPDELCQQLLNGNEESQNVGNLTNDATQHNDFSQIDNFDIPDVDFKTFNFCPGLSNGPSIFDMLDSSLFEQSSGSPHNYNMFPPMHSSKRLRESDMLYTSSGSCIGNTVPVFNQYGNYPCENIPDHPTLSSPYDPLLDTSDQFYDGNLTGSHASLNGNITSSSAPIYGAMKLELPSLQYAETQHGSWGRPTSSLPSLESVDTLIQSTPIEPIQSEAVYPQSSGLLEAIVYNSKSSKGSNNDSLQETTNMPNEAVKTEWDEQGEPYSLAQSAALVMTDYTPMSMCSVDGALAEITQDHDIKHETVSQLPDYNSRKEEILNQIDFTQSDALFDLGWFGDNIEHGNDQSVIKGAFLNALLGDDFQGKQ* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0030 513 Pfam Myb-like DNA-binding domain 40 87 IPR001005 -
Apr2g0030 513 Pfam Myb-like DNA-binding domain 93 136 IPR001005 -
Apr2g0030 513 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 510 - -
Apr2g0030 513 SUPERFAMILY Homeodomain-like 38 134 IPR009057 -
Apr2g0030 513 Gene3D - 39 92 - -
Apr2g0030 513 Gene3D - 95 141 - -
Apr2g0030 513 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Apr2g0030 513 CDD SANT 42 87 IPR001005 -
Apr2g0030 513 ProSiteProfiles Myb-like domain profile. 35 87 IPR001005 -
Apr2g0030 513 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 510 - -
Apr2g0030 513 MobiDBLite consensus disorder prediction 1 41 - -
Apr2g0030 513 SMART sant 92 140 IPR001005 -
Apr2g0030 513 SMART sant 39 89 IPR001005 -
Apr2g0030 513 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 87 IPR017930 -
Apr2g0030 513 CDD SANT 95 136 IPR001005 -
Apr2g0030 513 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0030 Apr-Chr2 492898 498338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0030 20 509 MYB Transcription Factor Family AT5G06100 38.171 4.62e-89 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr2g0030 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0030 K09422 - gmx:100800658 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0030 2 492898 498338 Apr9g1596 9 25345410 25346665 PCT