Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0029 ATGGCTTATGATGATGAGGTTGCAGTTGATAACTCAGATCCAACATCATGCGAATGTGATATTTGTGGCAAGGTTTTCAGCAGTGGCAAAGCGTTGTGTGGCCATAGAAACAGATCTCACACTCAAGCTTCCAAGAAGCATCAAAAGAGGGTAATAACTCGTCTCTTTAATGACTCAAAATCGAGTGATATGCATAAAAGGGTTAATCATGCTTATGATGTTGACCCTTTGGTGTGTGGTGGGAAACCCACTTGTTATCTTTGCAAGAGGGACTTCCTTTCTAAGAATGCTTTGTTTGGGCACATGAGATCTCACCCTAAGCGGCAATGGAAGGGTGTGTGTCCTCCTATTCACTCTCACAGACACTCTTCTTCAACTTTTTCTGATTCACCATCTCATTATTATGGTTCTATGAAAGATACTATAGAGCAAGATGATGGCAGTGATGATGATGATGACGACGACGATGACGACGACGACGATGATTGTGTTAGTGAGGATGAGGATCACATTGATGTCACTGATCTTTTAAAGTTAACTTCTCCAAGTTGGTTAAAGACAGATAAGAGAGGCAGAAGTAGCATTGGTGCTTATGCGGCTGCCGAAACTCTCGTACTCATTTGTTCTCATGCTAGGTCCTTGTGCGGTGAGTCTAGTAGTAGACTTAGCCTCAAGGAGGCTAGTGTGAAGCCAAACAGTACTTCTCATGTTCCAACCCCAAGTAAGAAAAGGAAGATTGGTGAATCATCACTTAATGAGAGACTTATGGTAAAGAAGATAAAAGTCTATCATGGACAAGTTTTGAATAAGGATAATGGGGAGGAGGAGGCAAGGAAGAGTGAGAAATTGGTATTGAAATCAAAGGATAAAGGTTCAATGTATGAAAATGAAAGTCGAGAAAAACTGGGTGGGTATAAGTGTCACACTTGTGGTAAATCCTTTACTACTTTTCAAGGCTTAGGAGGACACAGATCAATACACAGAGGGAAGAACATTGTAGGAGCATATGCTACAACGGATGAAGAGAACGATTCTTACTATTCAGATTGTGCGCCTAAGATGGATGTGGCATTACTGAGTGAAGAAACTTCAGAAGATGATGCAAGTCAATAA 1113 0.4106 MAYDDEVAVDNSDPTSCECDICGKVFSSGKALCGHRNRSHTQASKKHQKRVITRLFNDSKSSDMHKRVNHAYDVDPLVCGGKPTCYLCKRDFLSKNALFGHMRSHPKRQWKGVCPPIHSHRHSSSTFSDSPSHYYGSMKDTIEQDDGSDDDDDDDDDDDDDDCVSEDEDHIDVTDLLKLTSPSWLKTDKRGRSSIGAYAAAETLVLICSHARSLCGESSSRLSLKEASVKPNSTSHVPTPSKKRKIGESSLNERLMVKKIKVYHGQVLNKDNGEEEARKSEKLVLKSKDKGSMYENESREKLGGYKCHTCGKSFTTFQGLGGHRSIHRGKNIVGAYATTDEENDSYYSDCAPKMDVALLSEETSEDDASQ* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0029 370 MobiDBLite consensus disorder prediction 121 167 - -
Apr2g0029 370 ProSitePatterns Zinc finger C2H2 type domain signature. 17 40 IPR013087 -
Apr2g0029 370 MobiDBLite consensus disorder prediction 226 240 - -
Apr2g0029 370 MobiDBLite consensus disorder prediction 226 245 - -
Apr2g0029 370 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 275 355 IPR044653 GO:0003700
Apr2g0029 370 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 10 168 IPR044653 GO:0003700
Apr2g0029 370 PANTHER ZINC FINGER PROTEIN ZAT4-LIKE 10 168 - -
Apr2g0029 370 PANTHER ZINC FINGER PROTEIN ZAT4-LIKE 275 355 - -
Apr2g0029 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Apr2g0029 370 SUPERFAMILY beta-beta-alpha zinc fingers 84 327 IPR036236 -
Apr2g0029 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 305 332 IPR013087 -
Apr2g0029 370 Gene3D Classic Zinc Finger 3 108 - -
Apr2g0029 370 ProSitePatterns Zinc finger C2H2 type domain signature. 307 327 IPR013087 -
Apr2g0029 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 17 45 IPR013087 -
Apr2g0029 370 SMART c2h2final6 305 327 IPR013087 -
Apr2g0029 370 SMART c2h2final6 83 105 IPR013087 -
Apr2g0029 370 SMART c2h2final6 17 40 IPR013087 -
Apr2g0029 370 Gene3D Classic Zinc Finger 278 362 - -
Apr2g0029 370 Pfam C2H2-type zinc finger 305 329 - -
Apr2g0029 370 Pfam C2H2-type zinc finger 18 41 - -
Apr2g0029 370 Pfam C2H2-type zinc finger 85 107 - -
Apr2g0029 370 MobiDBLite consensus disorder prediction 121 137 - -
Apr2g0029 370 MobiDBLite consensus disorder prediction 144 167 - -
Apr2g0029 370 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0029 Apr-Chr2 467670 468782 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0029 19 127 C2H2 Transcription Factor Family AT2G26940 35.965 1.28e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr2g0029 zf-C2H2_6 4.5e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0029 - - aprc:113854138 706.827