Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0028 ATGGACAGTGATAAAGAAAGACAAGAAGTTTCAGATCATGAAGAGGAATCCTATGAGAATGAAGAGAAGATGAAAGGATCTCAACTGGGGTCTTTCAAAGATGAAGCTGAATCGATGATGGTTGATGAGGTTGCACTATATAACTCAGCACCAGGACCACGTGAGTGCAACATTTGCGGTAAGACTTTCAGAAATGGCAAAGCATTGGGAGGCCACAGAAGATCTCACTTTCAAGCTCTGAGGAAGAATCAAAGGAAGGTAAAAGCGCGTTTCCCTAATCAGAACTCAAGAATAGGTGATATTAACAATAGGGCTATTTGTGATTATGATGACGATGATGATGTTAATGATGACCCTTTTATGTGTGATGGAAAATTCACTTGTTTTCTTTGCAAGAAGGAATTTCCTTCCAAAAATTCCTTGTTTGGACACATGAAATCTCACCCTGAGAGATCTTGGAGGGGTGTGTTTCCTCCTACTCATCACCCCCATAAGCATTCTTCTTCTTCCCACAACTCTGATTCTATGGAAAACCATAACGAAGATGAGGAGGATGATGATTTTGTTCCGAATGTTGCTGTTCTTGCACTAGATGAGGAACATGTAGTGCTTGATCTCTTGCAGTTCACTTCACCAAGTTGGCTAACGAAAGATAAGAGAGGCAGAAGATGTATTGGAGGTTATGCTGCTGCTGAAACTCTCGCCTTCATTTATTCTTATGCTAAGTTATATCGTGGTGAATCTAGTAATAATAAGGCTGGAGTGGAGCAGAATACTCCTGAAGTTCCAACTCCTCAAGTTCCATGGAAATGTAACAAAAGTATGATTGGTGAATCATCAACAAGTGGCAAACCTGCGGGGAAGAAGATAAAGATCTATTTTAGTGAGATGCAGGTGGAAAACAAAGTTGAAGAGAGTGATGATTGTGATGATAGTGACATGGTGGATGGGGATGATGATGAGGAGGATGTGATGAATGAGAATGTGGATGCTGAAGAAACCCTTGGTAGGGTGCAGGATCATGCTGGTCATTTTGGTGAAAGCAAGCTGAAGAAGGTGGAGAAAGGGAAGAATATTGAGAACTTGGCATTGAACAAATCAAAGGCAAGAGACTCAGAATATGTGAATGAAGGACAAGAGAACTTGGGTGGGTACAAATGTGGCACTTGTGGGAAATCTTTTTCAACTTTCCAAGGCTTAGGAGGACACAGATCTATTCATAAGGAGAAGAACATTGCAACCATGAATGCATCAAAGGCCTCAGAAGCTGTTGCTGAAGAAAACCATTCTCGCAGCACTAGTAATATGAATAAAATGGATGAGGCATCATTGAATGAAGAAACAGAAGCAGATGAGGCATGTCAGTCTTCGGGTGCCAAGAAAATGAACTTTGATCTAAATGAACCTTATGCTATGGAGGATTAA 1425 0.4084 MDSDKERQEVSDHEEESYENEEKMKGSQLGSFKDEAESMMVDEVALYNSAPGPRECNICGKTFRNGKALGGHRRSHFQALRKNQRKVKARFPNQNSRIGDINNRAICDYDDDDDVNDDPFMCDGKFTCFLCKKEFPSKNSLFGHMKSHPERSWRGVFPPTHHPHKHSSSSHNSDSMENHNEDEEDDDFVPNVAVLALDEEHVVLDLLQFTSPSWLTKDKRGRRCIGGYAAAETLAFIYSYAKLYRGESSNNKAGVEQNTPEVPTPQVPWKCNKSMIGESSTSGKPAGKKIKIYFSEMQVENKVEESDDCDDSDMVDGDDDEEDVMNENVDAEETLGRVQDHAGHFGESKLKKVEKGKNIENLALNKSKARDSEYVNEGQENLGGYKCGTCGKSFSTFQGLGGHRSIHKEKNIATMNASKASEAVAEENHSRSTSNMNKMDEASLNEETEADEACQSSGAKKMNFDLNEPYAMED* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0028 474 MobiDBLite consensus disorder prediction 251 283 - -
Apr2g0028 474 Gene3D Classic Zinc Finger 365 451 - -
Apr2g0028 474 MobiDBLite consensus disorder prediction 1 30 - -
Apr2g0028 474 Pfam C2H2-type zinc finger 126 150 - -
Apr2g0028 474 Pfam C2H2-type zinc finger 55 76 - -
Apr2g0028 474 Pfam C2H2-type zinc finger 385 409 - -
Apr2g0028 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 126 148 IPR013087 -
Apr2g0028 474 ProSitePatterns Zinc finger C2H2 type domain signature. 128 148 IPR013087 -
Apr2g0028 474 Gene3D Classic Zinc Finger 52 148 - -
Apr2g0028 474 MobiDBLite consensus disorder prediction 420 474 - -
Apr2g0028 474 MobiDBLite consensus disorder prediction 153 185 - -
Apr2g0028 474 MobiDBLite consensus disorder prediction 251 265 - -
Apr2g0028 474 MobiDBLite consensus disorder prediction 420 441 - -
Apr2g0028 474 ProSitePatterns Zinc finger C2H2 type domain signature. 387 407 IPR013087 -
Apr2g0028 474 PANTHER ZINC FINGER PROTEIN ZAT4-LIKE 5 449 - -
Apr2g0028 474 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Apr2g0028 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Apr2g0028 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 385 412 IPR013087 -
Apr2g0028 474 SUPERFAMILY beta-beta-alpha zinc fingers 55 403 IPR036236 -
Apr2g0028 474 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 5 449 IPR044653 GO:0003700
Apr2g0028 474 SMART c2h2final6 126 148 IPR013087 -
Apr2g0028 474 SMART c2h2final6 385 407 IPR013087 -
Apr2g0028 474 SMART c2h2final6 54 76 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0028 Apr-Chr2 460924 462348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0028 56 159 C2H2 Transcription Factor Family AT2G26940 33.654 7.23e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr2g0028 zf-C2H2_6 4.6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0028 - - aprc:113854137 867.84