Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0023 ATGTCAAGTGGAGCAACATACTGGTGCTATACATGCAGGCAACCAATCTGGCTTGGGGGAAGTGATGCCACATGCCCTTACTGCAATGGAGGCTTTGTGGAAGAATTTAATGAGATACAACGAGTTGCAACCCGACGCGGTTTTTCATCACAGCCAGAAGATTTTGTTCCAATGCCTGACATAGTTGATGCTATACAAGCTGTTATGGAACAAAGAGGCTCTGAACCAAGAGTTGGACTTAGAGATGCTGTTGAAAATTTCATGAGGCAAAGAATGGCTGGAAGATACTCAAACTTTGATGTTAGAAGGAGGTCTGGTTCTAACTCAGTTCCTGAACAGAATTGGGATGTTTATAGTTCAGGTCCTTATTTGATAGTTCATGGTCAAGGTGGTCAAGCTCCAGGGTTCACCTTGTCTAATAGCCACTCAAGGGGCGGTCCTAGGCATGCTGATTTTGGCAACTACTTTATGGGGACTGCTGGACTGGAAGGACTCCTTGAACAACTCACTACAAATGATCGGCTTGGCCCGCCGCCTGCATCGCGTTCTTCAATTGATGCAATGCCAACTATTAAGATCACACAAGCACATCTTCGCTCTGATTCACACTGTCCAGTTTGTAAAGAAAAATTTGAACTGGGTTCTGAGGCCAGGAAGATGCCATGTAACCATATTTACCATTCAGACTGTATTATTCCATGGTTAGTTCAGCATAACTCATGTCCTGTTTGCCGTGTTGAGCTGCCTCCTCAAGGTCGTCGTGCTAGTTCTCGGGGTATTCGAATTTGGGGTGGAAGGAATGCCAATAGTGGTGGTGACAGCAGTGATATCTCCAGCGGAAGGGAGAATAGCCAGGTGAACAATGGAAGTAGAAATATACTATCATCTTTCTGGCCATTTGGTTCTTCAAGTTCTAATACTTAA 924 0.447 MSSGATYWCYTCRQPIWLGGSDATCPYCNGGFVEEFNEIQRVATRRGFSSQPEDFVPMPDIVDAIQAVMEQRGSEPRVGLRDAVENFMRQRMAGRYSNFDVRRRSGSNSVPEQNWDVYSSGPYLIVHGQGGQAPGFTLSNSHSRGGPRHADFGNYFMGTAGLEGLLEQLTTNDRLGPPPASRSSIDAMPTIKITQAHLRSDSHCPVCKEKFELGSEARKMPCNHIYHSDCIIPWLVQHNSCPVCRVELPPQGRRASSRGIRIWGGRNANSGGDSSDISSGRENSQVNNGSRNILSSFWPFGSSSSNT* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0023 307 ProSiteProfiles Zinc finger RING-type profile. 204 245 IPR001841 -
Apr2g0023 307 PANTHER OS03G0351800 PROTEIN 1 306 - -
Apr2g0023 307 Pfam zinc-ribbon 6 35 IPR039525 GO:0061630
Apr2g0023 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 306 - -
Apr2g0023 307 SUPERFAMILY RING/U-box 184 251 - -
Apr2g0023 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 251 IPR013083 -
Apr2g0023 307 CDD RING-H2_RNF126_like 204 245 - -
Apr2g0023 307 SMART ring_2 204 244 IPR001841 -
Apr2g0023 307 MobiDBLite consensus disorder prediction 268 290 - -
Apr2g0023 307 Pfam Ring finger domain 203 245 IPR001841 -
Apr2g0023 307 MobiDBLite consensus disorder prediction 255 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0023 Apr-Chr2 365850 368739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0023 147 253 C3H Transcription Factor Family AT5G01980 43.119 7.65e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g0023 K11982 - ccaj:109790507 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0023 2 365850 368739 Apr9g1600 9 25364757 25367134 PCT